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Report for CCDS94125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94125.1 Public Homo sapiens 7 SPDYE13 24 110 108 CCDS HistoryNCBI Gene:105180390Re-query CCDS DB by CCDS ID:94125.1Re-query CCDS DB by GeneID:105180390See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652175.2 ENSP00000498801.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652175.2Link to Ensembl Protein Viewer:ENSP00000498801.1Re-query CCDS DB by Nucleotide ID:ENST00000652175Re-query CCDS DB by Protein ID:ENSP00000498801
Original member Current member NCBI NM_001382563.2 NP_001369492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382563.2Link to Protein Sequence:NP_001369492.1Re-query CCDS DB by Nucleotide ID:NM_001382563Re-query CCDS DB by Protein ID:NP_001369492Link to BLAST:NP_001369492.1

Chromosomal Locations for CCDS 94125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75281243 75281372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75282368 75282586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75283619 75283677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75284905 75284990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75286696 75286939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75287062 75287121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGGACAGATTTTGGGAAAGATCATGATGAGCCATCAACCGCAGCCCCAGGAAGAGCGGAGCCCCCAGC
GGAGCACCTCAGGGTACCCCCTCCAGGAGGTGGTGGATGATGAAGTGTTGGGACCATCAGCCCCTGGGGT
AGATCCCAGCCCCCCACGTAGGTCCCTTGGCTGGAAAAGGAAGAGGGAATGTTTGGATGAATCTGATGAT
GAGCCAGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCTGGGTGGCGGAGACGCTGTGTGGCCTCAAGA
TGAAGGCGAAGCGACGGCGAGTGTCGCTCGTGCTCCCTGAGTACTACGAGGCCTTCAACAGGCTGCTTGA
GGATCCTGTCATTAAAAGACTCCTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCT
ATGGTCATAGCGTATTTCAGCCGGGCCGGCCTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGG
CTCTCTATCTGGCCAATGACATGGAGGAGGACGACGAGGCCCCCAAACAAAACATCTTCTACTTCCTGTA
CGAGGAGACCCGCTCTCATATACCCTTGCTCAGTGAGCTTTGGTTCCAGTTATGCCGTTACATGAACCCG
AGGGCCAGGAAGAACTGCTCTCAGATAGCCTTGTTCCGGAAGTATCGGTTCCACTTCTTTTGTTCCATGC
GCTGCAGGGCTTGGGTTTCCCTGGAGGAGTTGGAAGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTG
GGCGCGAGATCGCGCCCACCTTTCCTAG

Translation (265 aa):
MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDD
EPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLA
MVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNP
RARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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