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Report for CCDS86012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86012.1 Public Homo sapiens 1 NOTCH2NLB 24 110 108 CCDS HistoryNCBI Gene:100996763Re-query CCDS DB by CCDS ID:86012.1Re-query CCDS DB by GeneID:100996763See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593495.4 ENSP00000472124.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000593495.4Link to Ensembl Protein Viewer:ENSP00000472124.1Re-query CCDS DB by Nucleotide ID:ENST00000593495Re-query CCDS DB by Protein ID:ENSP00000472124
Original member Current member NCBI NM_001364008.2 NP_001350937.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001364008.2Link to Protein Sequence:NP_001350937.1Re-query CCDS DB by Nucleotide ID:NM_001364008Re-query CCDS DB by Protein ID:NP_001350937Link to BLAST:NP_001350937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350937.1 249 P0DPK3-2 249 100% 0 0

Chromosomal Locations for CCDS 86012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 148607083 148607159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 148607410 148607745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 148615691 148615950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 148640016 148640089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 148679462 148679464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGTGTCGAGATGGCTATGAACCCTGTGTAAATGAAGGAATGTGTGTTACCTACCACAATGGCACAGGAT
ACTGCAAATGTCCAGAAGGCTTCTTGGGGGAATATTGTCAACATCGAGACCCCTGTGAGAAGAACCGCTG
CCAGAATGGTGGGACTTGTGTGGCCCAGGCCATGCTGGGGAAAGCCACGTGCCGATGTGCCTCAGGGTTT
ACAGGAGAGGACTGCCAATACTCGACATCTCATCCATGCTTTGTGTCTCGACCTTGCCTGAATGGCGGCA
CATGCCATATGCTCAGCCGGGATACCTATGAGTGCACCTGTCAAGTCGGGTTTACAGGTAAGGAGTGCCA
ATGGACCGATGCCTGCCTGTCTCATCCCTGTGCAAATGGAAGTACCTGTACCACTGTGGCCAACCAGTTC
TCCTGCAAATGCCTCACAGGCTTCACAGGGCAGAAGTGTGAGACTGATGTCAATGAGTGTGACATTCCAG
GACACTGCCAGCATGGTGGCATCTGCCTCAACCTGCCTGGTTCCTACCAGTGCCAGTGCCTTCAGGGCTT
CACAGGCCAGTACTGTGACAGCCTGTATGTGCCCTGTGCACCCTCGCCTTGTGTCAATGGAGGCACCTGT
CGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGCCTTCCAGAAACAGTGAGAAGAGGAACAGAGCTCT
GGGAAAGAGACAGGGAAGTCTGGAATGGAAAAGAACACGATGAGAATTAG

Translation (249 aa):
MCRDGYEPCVNEGMCVTYHNGTGYCKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGF
TGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQF
SCKCLTGFTGQKCETDVNECDIPGHCQHGGICLNLPGSYQCQCLQGFTGQYCDSLYVPCAPSPCVNGGTC
RQTGDFTFECNCLPETVRRGTELWERDREVWNGKEHDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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