NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3828.1 Public Homo sapiens 4 NEIL3 24 110 108 CCDS HistoryNCBI Gene:55247Re-query CCDS DB by CCDS ID:3828.1Re-query CCDS DB by GeneID:55247See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264596.4 ENSP00000264596.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264596.4Link to Ensembl Protein Viewer:ENSP00000264596.3Re-query CCDS DB by Nucleotide ID:ENST00000264596Re-query CCDS DB by Protein ID:ENSP00000264596
Original member Current member NCBI NM_018248.3 NP_060718.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018248.3Link to Protein Sequence:NP_060718.3Re-query CCDS DB by Nucleotide ID:NM_018248Re-query CCDS DB by Protein ID:NP_060718Link to BLAST:NP_060718.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060718.3 605 Q8TAT5 605 100% 0 0

Chromosomal Locations for CCDS 3828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 177309954 177310109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177322459 177322580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177335688 177335822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177336108 177336321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177339783 177339857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177341476 177341642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177351380 177351549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177353308 177353728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177360503 177360677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 177362289 177362471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGTGGAAGGACCAGGCTGTACTCTGAATGGAGAGAAGATTCGCGCGCGGGTGCTCCCGGGCCAGGCGG
TGACCGGCGTGCGGGGAAGCGCTCTGCGGAGTCTGCAGGGCCGCGCCTTGCGGCTCGCAGCCTCCACGGT
TGTGGTCTCCCCGCAGGCTGCTGCACTGAATAATGATTCCAGCCAGAATGTCTTGAGCCTGTTTAATGGA
TATGTTTACAGTGGCGTGGAAACTTTGGGGAAGGAGCTCTTTATGTACTTTGGACCAAAAGCTTTACGGA
TTCATTTCGGAATGAAAGGCTTCATCATGATTAATCCACTTGAGTATAAATATAAAAATGGAGCTTCTCC
TGTTTTGGAAGTGCAGCTCACCAAAGATTTGATTTGTTTCTTTGACTCATCAGTAGAACTCAGAAACTCA
ATGGAAAGCCAACAGAGAATAAGAATGATGAAAGAATTAGATGTATGTTCACCTGAATTTAGTTTCTTGA
GAGCAGAAAGTGAAGTTAAAAAACAGAAAGGCCGGATGCTAGGTGATGTGCTAATGGATCAGAACGTATT
GCCTGGAGTAGGGAACATCATCAAAAATGAAGCTCTCTTTGACAGTGGTCTCCACCCAGCTGTTAAAGTT
TGTCAATTAACAGATGAACAGATCCATCACCTCATGAAAATGATACGTGATTTCAGCATTCTCTTTTACA
GGTGCCGTAAAGCAGGACTTGCTCTCTCTAAACACTATAAGGTTTACAAGCGTCCTAATTGTGGTCAGTG
CCACTGCAGAATAACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTTCTGTCCTCACTGTCAA
AAAGAAAATCCTCAACATGTTGACATATGCAAGCTACCGACTAGAAATACTATAATCAGTTGGACATCTA
GCAGGGTGGATCATGTTATGGACTCCGTGGCTCGGAAGTCGGAAGAGCACTGGACCTGTGTGGTGTGTAC
TTTAATCAATAAGCCCTCTTCTAAGGCATGTGATGCTTGCTTGACCTCAAGGCCTATTGATTCAGTGCTC
AAGAGTGAAGAAAATTCTACTGTCTTTAGCCACTTAATGAAGTACCCGTGTAATACTTTTGGAAAACCTC
ATACAGAAGTCAAGATCAACAGAAAAACTGCATTTGGAACTACAACTCTTGTCTTGACTGATTTTAGCAA
TAAATCCAGTACTTTGGAAAGAAAAACAAAGCAAAACCAGATACTAGATGAGGAGTTTCAAAACTCTCCT
CCTGCTAGTGTTTGTTTGAATGATATACAGCACCCCTCCAAGAAGACAACAAACGATATAACTCAACCAT
CCAGCAAAGTAAACATATCACCTACAATCAGTTCAGAATCTAAATTATTTAGTCCAGCACATAAAAAACC
GAAAACAGCCCAATACTCATCACCAGAGCTTAAAAGCTGCAACCCTGGATATTCTAACAGTGAACTTCAA
ATTAATATGACAGATGGCCCTCGTACCTTAAATCCTGACAGCCCTCGCTGCAGTAAACACAACCGCCTCT
GCATTCTCCGAGTTGTGGGGAAGGATGGGGAAAACAAGGGCAGGCAGTTTTATGCCTGTCCTCTACCTAG
AGAAGCACAATGTGGATTTTTTGAATGGGCAGATTTGTCCTTCCCATTCTGCAACCATGGCAAGCGTTCC
ACCATGAAAACAGTATTGAAGATTGGACCTAACAATGGAAAGAATTTTTTTGTGTGTCCTCTTGGGAAGG
AAAAACAATGCAATTTTTTCCAGTGGGCAGAAAATGGGCCAGGAATAAAAATTATTCCTGGATGCTAA

Translation (605 aa):
MVEGPGCTLNGEKIRARVLPGQAVTGVRGSALRSLQGRALRLAASTVVVSPQAAALNNDSSQNVLSLFNG
YVYSGVETLGKELFMYFGPKALRIHFGMKGFIMINPLEYKYKNGASPVLEVQLTKDLICFFDSSVELRNS
MESQQRIRMMKELDVCSPEFSFLRAESEVKKQKGRMLGDVLMDQNVLPGVGNIIKNEALFDSGLHPAVKV
CQLTDEQIHHLMKMIRDFSILFYRCRKAGLALSKHYKVYKRPNCGQCHCRITVCRFGDNNRMTYFCPHCQ
KENPQHVDICKLPTRNTIISWTSSRVDHVMDSVARKSEEHWTCVVCTLINKPSSKACDACLTSRPIDSVL
KSEENSTVFSHLMKYPCNTFGKPHTEVKINRKTAFGTTTLVLTDFSNKSSTLERKTKQNQILDEEFQNSP
PASVCLNDIQHPSKKTTNDITQPSSKVNISPTISSESKLFSPAHKKPKTAQYSSPELKSCNPGYSNSELQ
INMTDGPRTLNPDSPRCSKHNRLCILRVVGKDGENKGRQFYACPLPREAQCGFFEWADLSFPFCNHGKRS
TMKTVLKIGPNNGKNFFVCPLGKEKQCNFFQWAENGPGIKIIPGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH