NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS72873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72873.1 Public Homo sapiens 1 LIX1L 24 110 108 CCDS HistoryNCBI Gene:128077Re-query CCDS DB by CCDS ID:72873.1Re-query CCDS DB by GeneID:128077See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000604000.4 ENSP00000474487.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000604000.4Link to Ensembl Protein Viewer:ENSP00000474487.3Re-query CCDS DB by Nucleotide ID:ENST00000604000Re-query CCDS DB by Protein ID:ENSP00000474487
Original member Current member NCBI NM_153713.3 NP_714924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153713.3Link to Protein Sequence:NP_714924.1Re-query CCDS DB by Nucleotide ID:NM_153713Re-query CCDS DB by Protein ID:NP_714924Link to BLAST:NP_714924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714924.1 337 Q8IVB5 337 100% 0 0

Chromosomal Locations for CCDS 72873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145936310 145936552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145936908 145936985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145937604 145937699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145942713 145942853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145947619 145947782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145957636 145957927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAGACTATGCGAGCGCAGCGGCTGCAGCCTGGTGTGGGCACCAGCGGGAGGGGCACTCTCCGAGCGC
TGCGGCCCGGAGTGACTGGGGCCGCGGCCGCCACCGCCACACCCCCTGCGGGCCCCCCGCCTGCCCCGCC
GCCTCCCGCACCGCCCCCGCCGCCGCTGCTCCTGTCTGGGGCCCCAGGACTACCCCTGCCCCCCGGCGCC
GCCGGCAGCCCGGCAGTGCTGCGAGAGGCCGTGGAGGCCGTGGTGAGGAGCTTCGCCAAGCACACGCAGG
GCTATGGCCGAGTGAATGTGGTGGAGGCACTTCAGGAATTCTGGCAGATGAAGCAGTCCCGTGGTGCTGA
CTTAAAGAATGGGGCTCTAGTGGTTTATGAGATGGTTCCCTCCAACAGCCCTCCTTATGTCTGCTATGTC
ACCCTGCCTGGGGGAAGCTGCTTTGGGAGTTTCCAGTTTTGCCCCACAAAAGCTGAGGCCCGGAGGAGTG
CTGCAAAGATTGCGCTAATGAATTCTGTGTTTAATGAACATCCTTCCCGAAGAATCACTGATGAGTTCAT
CGAGAAGAGTGTCTCTGAGGCCCTGGCATCTTTTAATGGCAACAGGGAGGAAGCTGACAACCCAAATACA
GGGATTGGTGCCTTCCGATTCATGCTGGAATCCAACAAGGGCAAATCAATGTTGGAGTTCCAGGAGCTAA
TGACAGTTTTTCAACTGCTACACTGGAATGGCAGCCTTAAGGCCATGAGGGAACGACAATGCTCTCGGCA
GGAGGTGTTGGCTCATTATTCGCACCGGGCCCTGGATGATGATATTCGCCACCAAATGGCCTTGGACTGG
GTGAGCCGGGAGCAGAGTGTGCCGGGGGCACTGTCTAGAGAGCTGGCCTCTACTGAGCGGGAGCTGGATG
AAGCCCGACTGGCAGGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTTGTGCTGGCTGCTGG
GCAGTTGGGCAATATGCATTCTTCCAACTGCTAG

Translation (337 aa):
METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGA
AGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYV
TLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNT
GIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDW
VSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDILVLAAGQLGNMHSSNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH