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Report for CCDS31956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31956.1 Public Homo sapiens 13 KATNAL1 24 110 108 CCDS HistoryNCBI Gene:84056Re-query CCDS DB by CCDS ID:31956.1Re-query CCDS DB by GeneID:84056See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380615.8 ENSP00000369989.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380615.8Link to Ensembl Protein Viewer:ENSP00000369989.3Re-query CCDS DB by Nucleotide ID:ENST00000380615Re-query CCDS DB by Protein ID:ENSP00000369989
Original member Current member EBI ENST00000380617.7 ENSP00000369991.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380617.7Link to Ensembl Protein Viewer:ENSP00000369991.3Re-query CCDS DB by Nucleotide ID:ENST00000380617Re-query CCDS DB by Protein ID:ENSP00000369991
Original member Current member NCBI NM_001014380.3 NP_001014402.1 Accepted alive Link to Nucleotide Sequence:NM_001014380.3Link to Protein Sequence:NP_001014402.1Re-query CCDS DB by Nucleotide ID:NM_001014380Re-query CCDS DB by Protein ID:NP_001014402Link to BLAST:NP_001014402.1
Original member Current member NCBI NM_032116.5 NP_115492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032116.5Link to Protein Sequence:NP_115492.1Re-query CCDS DB by Nucleotide ID:NM_032116Re-query CCDS DB by Protein ID:NP_115492Link to BLAST:NP_115492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014402.1 490 Q9BW62 490 100% 0 0
NP_115492.1 490 Q9BW62 490 100% 0 0

Chromosomal Locations for CCDS 31956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30208540 30208738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30210316 30210442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30227412 30227546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30230468 30230594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30231314 30231472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30240460 30240565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30240959 30241086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30255447 30255615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30280063 30280223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30283616 30283777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGAATTTGGCTGAGATTTGTGATAATGCAAAGAAAGGAAGAGAATATGCCCTTCTTGGAAATTACGACT
CATCAATGGTATATTACCAGGGGGTGATGCAGCAGATTCAGAGACATTGCCAGTCAGTCAGAGATCCAGC
TATCAAAGGCAAATGGCAACAGGTTCGGCAGGAATTATTGGAGGAATATGAACAAGTTAAAAGTATTGTC
AGCACTTTAGAAAGTTTTAAAATTGACAAGCCTCCAGATTTCCCTGTGTCCTGTCAAGATGAACCATTTA
GAGATCCTGCTGTTTGGCCACCCCCTGTTCCTGCAGAACACAGAGCTCCACCTCAGATCAGGCGTCCCAA
TCGAGAAGTAAGACCTCTGAGGAAAGAAATGGCAGGAGTAGGAGCCCGGGGACCTGTAGGCCGAGCACAT
CCTATATCAAAGAGTGAAAAGCCTTCTACAAGTAGGGACAAGGACTATAGAGCAAGAGGGAGAGATGACA
AGGGAAGGAAGAATATGCAAGATGGTGCAAGTGATGGTGAAATGCCAAAATTTGATGGTGCTGGTTATGA
TAAGGATCTGGTGGAAGCCCTTGAAAGAGACATTGTATCCAGGAATCCTAGCATTCATTGGGATGACATA
GCAGATCTGGAAGAAGCTAAGAAGTTGCTAAGGGAAGCTGTTGTTCTTCCAATGTGGATGCCTGACTTTT
TCAAAGGGATTAGAAGGCCATGGAAGGGTGTACTGATGGTTGGACCCCCAGGCACTGGTAAAACTATGCT
AGCTAAAGCTGTTGCCACTGAATGTGGTACAACATTCTTCAACGTTTCGTCTTCTACACTGACATCTAAA
TACAGAGGTGAATCTGAGAAGTTAGTTCGTCTGTTGTTTGAGATGGCTAGATTTTATGCCCCTACCACGA
TCTTCATTGATGAGATAGATTCTATCTGCAGTCGAAGAGGAACCTCTGATGAACATGAGGCAAGTCGCAG
GGTCAAGTCTGAACTGCTCATTCAGATGGATGGAGTTGGAGGAGCTTTAGAAAATGATGATCCTTCCAAA
ATGGTTATGGTATTGGCTGCTACTAATTTCCCGTGGGACATTGATGAAGCTTTGCGAAGAAGGTTAGAAA
AAAGGATATATATACCTCTCCCAACAGCAAAAGGAAGAGCTGAGCTTCTGAAGATCAACCTTCGTGAGGT
CGAATTAGATCCTGATATTCAACTGGAAGATATAGCCGAGAAGATTGAGGGCTATTCTGGTGCTGACATC
ACTAATGTTTGCAGGGATGCCTCTTTAATGGCAATGAGACGGCGTATCAATGGCTTAAGTCCAGAAGAAA
TCCGTGCACTTTCTAAAGAGGAACTTCAGATGCCTGTTACCAAAGGAGACTTTGAATTGGCCCTAAAGAA
AATTGCTAAGTCTGTCTCTGCTGCAGACTTGGAGAAGTATGAAAAATGGATGGTTGAATTTGGATCTGCT
TGA

Translation (490 aa):
MNLAEICDNAKKGREYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIV
STLESFKIDKPPDFPVSCQDEPFRDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKEMAGVGARGPVGRAH
PISKSEKPSTSRDKDYRARGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEALERDIVSRNPSIHWDDI
ADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK
YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSK
MVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADI
TNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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