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Report for CCDS416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
416.1 Public Homo sapiens 1 GRIK3 24 110 108 CCDS HistoryNCBI Gene:2899Re-query CCDS DB by CCDS ID:416.1Re-query CCDS DB by GeneID:2899See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373091.8 ENSP00000362183.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373091.8Link to Ensembl Protein Viewer:ENSP00000362183.3Re-query CCDS DB by Nucleotide ID:ENST00000373091Re-query CCDS DB by Protein ID:ENSP00000362183
Original member Current member NCBI NM_000831.4 NP_000822.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000831.4Link to Protein Sequence:NP_000822.2Re-query CCDS DB by Nucleotide ID:NM_000831Re-query CCDS DB by Protein ID:NP_000822Link to BLAST:NP_000822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000822.2 919 Q13003-1 919 100% 0 0

Chromosomal Locations for CCDS 416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36801851 36802045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36804987 36805237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36806104 36806326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36817060 36817277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36819736 36819854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36825603 36825826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36841736 36841939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36850311 36850424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36853615 36853722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36859108 36859251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36859844 36860017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36869748 36869801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36872188 36872369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36880634 36880891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36890920 36891096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37033994 37034108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGACCGCTCCCTGGCGGCGCCTCCGGAGTCTGGTTTGGGAATACTGGGCCGGGCTCCTCGTGTGCGCCT
TCTGGATCCCGGACTCGCGCGGGATGCCCCACGTCATCCGGATCGGAGGAATCTTCGAGTATGCGGACGG
CCCCAACGCCCAGGTCATGAATGCCGAGGAGCATGCCTTTCGATTTTCTGCCAACATCATCAACAGGAAC
AGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGG
CGACCAAAAAGGCCTGTGACCAGCTGGCACTGGGCGTGGTGGCGATCTTCGGCCCATCACAGGGCTCCTG
CACCAATGCCGTCCAGTCCATCTGCAATGCCCTGGAGGTGCCCCACATCCAGCTGCGTTGGAAGCACCAC
CCGCTGGACAACAAGGACACCTTCTACGTGAACCTCTACCCCGACTACGCCTCGCTCAGCCATGCCATCC
TCGACCTGGTCCAGTACCTCAAGTGGCGGTCAGCCACCGTGGTCTATGACGACAGTACAGGGCTCATCCG
ACTGCAGGAGCTCATCATGGCCCCATCAAGATACAACATCCGCCTGAAGATCCGTCAGCTCCCCATCGAC
TCTGACGACTCGCGCCCCTTGCTCAAGGAGATGAAGCGAGGCCGGGAATTCCGCATTATCTTCGACTGCA
GCCACACTATGGCGGCCCAGATCCTCAAGCAGGCCATGGCCATGGGCATGATGACTGAGTACTACCACTT
CATCTTCACCACTCTGGATCTCTACGCTTTAGACCTGGAGCCCTACCGCTACTCAGGCGTGAACCTGACA
GGATTCCGGATTCTCAATGTGGACAACCCACACGTCTCGGCCATTGTGGAGAAGTGGTCCATGGAGCGGC
TGCAGGCAGCTCCCCGGTCCGAGTCTGGCCTGCTGGATGGAGTGATGATGACTGATGCAGCCTTACTGTA
CGACGCCGTCCATATCGTGTCCGTGTGCTACCAGCGGGCACCACAGATGACCGTGAACTCCCTGCAGTGC
CATCGGCACAAGGCCTGGCGCTTTGGCGGCCGCTTCATGAACTTCATCAAGGAGGCTCAATGGGAAGGAT
TAACTGGACGAATTGTTTTCAACAAAACTAGTGGCTTGCGGACGGATTTTGATCTGGACATCATCAGCCT
GAAAGAGGATGGCCTGGAGAAGGTTGGGGTGTGGAGTCCTGCCGACGGGCTCAACATCACTGAGGTTGCC
AAAGGCCGAGGCCCTAATGTCACCGACTCTCTGACAAACAGATCACTCATTGTCACCACAGTGCTGGAGG
AGCCCTTCGTCATGTTTCGGAAATCAGACAGGACGCTATACGGGAATGACCGGTTCGAGGGCTACTGCAT
CGACCTGCTAAAGGAGCTGGCCCACATCCTTGGTTTCTCCTATGAGATCCGGCTGGTGGAGGACGGCAAG
TACGGGGCACAGGATGACAAGGGCCAGTGGAACGGCATGGTCAAGGAGCTCATCGACCACAAGGCAGATC
TGGCCGTGGCCCCCCTGACCATCACCCATGTTCGAGAGAAGGCCATCGACTTCTCCAAGCCCTTCATGAC
ACTTGGTGTGAGCATCCTGTATCGAAAGCCCAATGGCACCAACCCCAGCGTCTTCTCCTTCCTCAATCCC
CTGTCCCCAGACATCTGGATGTATGTTCTCCTCGCCTACCTGGGGGTCAGCTGTGTCCTCTTCGTCATCG
CCAGGTTCAGCCCTTATGAGTGGTACGATGCTCACCCCTGCAACCCTGGCTCCGAGGTGGTGGAAAATAA
CTTCACTCTGCTTAACAGCTTCTGGTTTGGAATGGGATCCCTGATGCAGCAAGGGTCTGAGCTGATGCCC
AAAGCCCTGTCCACACGCATCATTGGTGGCATCTGGTGGTTCTTCACGCTCATCATCATCTCTTCCTACA
CGGCCAACCTGGCTGCCTTTCTGACCGTGGAGCGCATGGAATCACCCATTGACTCTGCTGATGACCTGGC
CAAGCAAACCAAAATCGAGTATGGGGCTGTCAAGGATGGGGCCACCATGACCTTCTTCAAGAAATCCAAG
ATCTCCACCTTCGAGAAGATGTGGGCCTTCATGAGCAGCAAGCCATCGGCGCTGGTGAAGAACAACGAGG
AGGGCATCCAGAGGGCCCTGACGGCCGACTACGCGCTGCTCATGGAGTCCACCACCATCGAGTACGTCAC
GCAGAGGAACTGCAACCTCACCCAGATCGGGGGCCTCATTGACTCCAAGGGCTACGGCATCGGCACGCCC
ATGGGCTCCCCATACCGGGACAAGATCACCATCGCCATCCTGCAGCTTCAGGAGGAGGACAAGCTGCATA
TCATGAAGGAGAAGTGGTGGCGGGGCAGCGGGTGTCCTGAGGAGGAAAACAAAGAGGCCAGTGCCCTGGG
GATCCAGAAGATCGGGGGCATCTTCATTGTCCTGGCCGCCGGGCTGGTCCTCTCTGTGCTGGTGGCCGTG
GGCGAGTTTGTGTACAAGCTCCGCAAAACAGCAGAGAGAGAGCAGCGTTCCTTCTGCAGCACCGTGGCCG
ATGAGATCCGTTTCTCCCTTACCTGCCAGCGTCGAGTCAAGCACAAGCCTCAGCCTCCCATGATGGTCAA
GACTGACGCCGTCATCAACATGCACACATTCAATGACCGCCGGCTTCCCGGCAAGGACAGCATGGCCTGC
AGCACATCCTTAGCCCCTGTGTTCCCCTAG

Translation (919 aa):
MTAPWRRLRSLVWEYWAGLLVCAFWIPDSRGMPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRN
RTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHH
PLDNKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID
SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLT
GFRILNVDNPHVSAIVEKWSMERLQAAPRSESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQMTVNSLQC
HRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVA
KGRGPNVTDSLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGK
YGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNP
LSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMP
KALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSK
ISTFEKMWAFMSSKPSALVKNNEEGIQRALTADYALLMESTTIEYVTQRNCNLTQIGGLIDSKGYGIGTP
MGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSGCPEEENKEASALGIQKIGGIFIVLAAGLVLSVLVAV
GEFVYKLRKTAEREQRSFCSTVADEIRFSLTCQRRVKHKPQPPMMVKTDAVINMHTFNDRRLPGKDSMAC
STSLAPVFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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