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Report for CCDS289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
289.1 Public Homo sapiens 1 GPN2 22 109 92 CCDS HistoryNCBI Gene:54707Re-query CCDS DB by CCDS ID:289.1Re-query CCDS DB by GeneID:54707See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000374135.8 ENSP00000363250.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374135.8Link to Ensembl Protein Viewer:ENSP00000363250.3Re-query CCDS DB by Nucleotide ID:ENST00000374135Re-query CCDS DB by Protein ID:ENSP00000363250
Original member Current member NCBI NM_018066.3 NP_060536.3 Accepted alive Link to Nucleotide Sequence:NM_018066.3Link to Protein Sequence:NP_060536.3Re-query CCDS DB by Nucleotide ID:NM_018066Re-query CCDS DB by Protein ID:NP_060536Link to BLAST:NP_060536.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060536.3 310 Q9H9Y4 310 100% 0 0

Chromosomal Locations for CCDS 289.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26879677 26879749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26884160 26884290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26885973 26886133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26888969 26889125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26889686 26890096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCAGGGGCCGCTCCGACCACGGCCTTCGGGCAGGCGGTGATCGGCCCGCCGGGCTCAGGGAAGACCA
CG
TACTGCCTGGGCATGAGTGAGTTCCTGCGCGCGCTGGGCCGGCGCGTGGCGGTGGTGAACCTGGACCC
G
GCCAACGAGGGGCTGCCGTACGAGTGTGCCGTGGACGTGGGCGAGCTGGTGGGGCTGGGCGACGTGATG
GAC
GCGCTGCGCCTGGGGCCCAACGGCGGCCTGCTCTACTGCATGGAGTACCTGGAAGCCAACCTGGACT
GG
CTGCGTGCCAAGCTCGACCCCCTCCGCGGCCACTACTTCCTCTTCGACTGCCCAGGCCAGGTGGAGCT
C
TGCACGCATCACGGCGCCTTGCGCAGCATCTTCTCCCAAATGGCGCAGTGGGACCTCAGGCTGACTGCC
GTC
CACCTCGTGGATTCTCACTACTGCACAGACCCTGCCAAGTTCATTTCAGTACTGTGTACCTCCCTGG
CC
ACCATGCTGCACGTGGAACTGCCCCACATCAACCTCCTTTCCAAGATGGACCTCATTGAGCATTATGG
G
AAGCTGGCCTTCAACCTGGACTACTACACAGAGGTTCTGGACCTCTCCTACCTGCTTGACCACCTGGCT
TCT
GACCCTTTCTTCCGCCACTACCGCCAGCTCAATGAGAAGCTAGTGCAGCTCATCGAAGACTATAGCC
TT
GTCTCCTTTATCCCTCTCAACATCCAGGACAAGGAGAGCATCCAGCGAGTCCTGCAGGCTGTGGATAA
A
GCCAATGGATACTGTTTCAGAGCCCAAGAGCAGCGAAGCTTGGAAGCCATGATGTCTGCCGCAATGGGA
GCC
GACTTCCATTTCTCTTCCACACTGGGCATCCAGGAGAAGTACCTGGCACCCTCGAACCAGTCAGTGG
AG
CAGGAAGCCATGCAGCTGTAG


Translation (310 aa):
MAGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLGDVM
D
ALRLGPNGGLLYCMEYLEANLDWLRAKLDPLRGHYFLFDCPGQVELCTHHGALRSIFSQMAQWDLR
LTA
V
HLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHYGKL
AFNLDYYTEVLDLSYLLDHLA
S
DPFFRHYRQLNEKLVQLIEDYSLVSFIPLNIQ
DKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAAMG
A
DFHFS
STLGIQEKYLAPSNQSVEQEAMQL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser