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Report for CCDS47475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47475.1 Public Homo sapiens 6 CTAGE9 24 110 108 CCDS HistoryNCBI Gene:643854Re-query CCDS DB by CCDS ID:47475.1Re-query CCDS DB by GeneID:643854See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314099.10 ENSP00000395587.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314099.10Link to Ensembl Protein Viewer:ENSP00000395587.2Re-query CCDS DB by Nucleotide ID:ENST00000314099Re-query CCDS DB by Protein ID:ENSP00000395587
Original member Current member NCBI NM_001145659.1 NP_001139131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145659.1Link to Protein Sequence:NP_001139131.1Re-query CCDS DB by Nucleotide ID:NM_001145659Re-query CCDS DB by Protein ID:NP_001139131Link to BLAST:NP_001139131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139131.1 777 A4FU28 777 100% 0 0

Chromosomal Locations for CCDS 47475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 131708684 131711017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGAGGAGCCTGGTGCTACCCCTCAGCCCTACCTGGGGCTGGTCCTGGAGGAGCTAGGCAGAGTTGTGG
CAGCACTACCTGAGAGTATGAGACCAGATGAGAATCCTTATGGTTTTCCATCGGAACTGGTGGTATGTGC
AGCTGTTATTGGATTTTTTGTTGTTCTCCTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTT
TATGTGGGAAGAGAGCAAAAACTTGGTGCAACGCTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTG
AAAAGTTTAGCCTTATTCAAAAAGAGTATGAAGGCTATGAAGTAGAGTCATCTTTAGAGGATGCCAGCTT
TGAGAAGGCGGCAGCAGAAGAAGCACGAAGTTTGGAGGCAACCTGTGAAAAGCTGAGCAGGTCCAATTCT
GAACTTGAGGATGAAATCCTCTGTCTAGAAAAAGACTTAAAAGAAGAGAAATCTAAACATTCTCAACAAG
ATGAATTGATGGCGGATATTTCAAAAAGTATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACA
AATAGCTGAAGCCAAAATCATCTGCAAGACATTTAAAATGAGTGAAGAACGACGGGCTATAGCAATAAAA
GATGCTTTGAATGAAAATTCTCAACTTCAGACAAGCCATAAACAGCTTTTTCAGCAAGAAGCTGAAGTAT
GGAAAGGACAAGTGAGTGAACTTAATAAACAGAAAATAACATTTGAAGACTCCAAAGTACACGCAGAACA
AGTTCTGAATGATAAAGAAAATCACATCAAGACCCTGACTGGACACTTGCCAATGATGAAAGATCAGGCT
GCTGTGCTTGAAGAAGACACAACGGATGATGATAACCTGGAATTAAAAGTGAACAGTCAATGGGAAAATG
GTGCTAACTTAGATGATCCTCCGAAAGGAGCTTTGAAGAAACTGATTCATGCTGCTAAGTTAAATGTTTC
TTTAAAAAGCTTAGAAGGAGAAAGAAACCACATTATTATTCAGTTATCTGAAGTGGACAAAACAAAGGAA
GAGCTTACAGAGCATATTAAAAATCTTCAGACTCAACAAGCATCTTTGCAATCAGAAAACATATATTTTG
AAAGTGAGAATCAGAAGCTTCAACAGAAACTTAAAATAATGACTGAATTCTATCAAGAAAATGAAATGAA
ACTCTACAGGAAATTAACAGTGGAGGAAAATTACCGAATAGAGGAAGAAGAGAAGCTTTCTAGAGTGGAA
GAAAAGATCAGCCATGCCACTGAAGAGCTGGAGACCTATAGAAAGCTAGCCAAAGATCTTGAAGAAGAAT
TGGAGAGAACTGTTCATTTTTATCAAAAGCAGGTTATTTCCTACGAGAAAAGAGGACATGATAATTGGTT
GGCAGCTCGGACTGCTGAAAGAAACCTCAGTGATTTAAGGAAAGAAAATGCTCACAACAAACAAAAATTA
ACTGAAAGAGAGTTGAAATTTGAACTTTTAGAAAAAGATCCTAATGCACTCGATGTTTCAAATACAGCAT
TTGGCAGAGAGCATTCCCCATGTAGTCCCTCACCATTGGGTCGGCCTTCATCTGAAACGAGAGCTTTTCC
CTCTCCTCAAACTTTGTTGGAGGATCCACTCAGACTCTCACCTGTGCTTCCAGGGGGAGGAGGAAGAGGC
CCAAGCAGCCCAGGGAATCCCCTGGACCATCAGATTACCAATGAAAGAGGAGAACCAAGCTATGACAGGT
TAATCGATCCTCACAGGGCTCCTTCTGACACTGGGTCCCTGTCATCTCCGGTGGAACAGGACCGTAGGAT
GATGTTTCCTCCACCAGGGCAATCATATCCTGATTCAACTCTTCCTCCACAAAGGGAAGACAGATTTTAT
TCTAATTCTGAAAGACTGTCTGGACCAGCAGAACCCAGAAGTTTTAAAATGACTTCTTTGGATAAAATGG
ATAGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATGCCAAAGATGATCTTGGTAATTTAAATGT
GCCTGATTCATCTCTCCCTGCTGAAAATGAAGCAACTGGCCCTGGCCTTATTCCTCCACCTCTTGCTCCA
ATCAGCGGTCCATTGTTTCCAGTGGATACAAGGGGCCCATTCATGAGAAGAGGACCTCCTTTCCCCCCAC
CTCCTCCAGGAACCATGTTTGGAGCTTCTCGAGGTTATTTTCCACCAAGGGATTTCCCAGGTCCACCACA
TGCTCCATTTGCAATGAGAAACATCTATCCACCGAGGGGTTTACCTCCTTACCTTCATCCGAGACCTGGA
TTTTACCCCAACCCCACATTCTGA

Translation (777 aa):
MEEPGATPQPYLGLVLEELGRVVAALPESMRPDENPYGFPSELVVCAAVIGFFVVLLFLWRSFRSVRSRL
YVGREQKLGATLSGLIEEKCKLLEKFSLIQKEYEGYEVESSLEDASFEKAAAEEARSLEATCEKLSRSNS
ELEDEILCLEKDLKEEKSKHSQQDELMADISKSIQSLEDESKSLKSQIAEAKIICKTFKMSEERRAIAIK
DALNENSQLQTSHKQLFQQEAEVWKGQVSELNKQKITFEDSKVHAEQVLNDKENHIKTLTGHLPMMKDQA
AVLEEDTTDDDNLELKVNSQWENGANLDDPPKGALKKLIHAAKLNVSLKSLEGERNHIIIQLSEVDKTKE
ELTEHIKNLQTQQASLQSENIYFESENQKLQQKLKIMTEFYQENEMKLYRKLTVEENYRIEEEEKLSRVE
EKISHATEELETYRKLAKDLEEELERTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENAHNKQKL
TERELKFELLEKDPNALDVSNTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRG
PSSPGNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPDSTLPPQREDRFY
SNSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRNDAKDDLGNLNVPDSSLPAENEATGPGLIPPPLAP
ISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGPPHAPFAMRNIYPPRGLPPYLHPRPG
FYPNPTF


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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