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Report for CCDS10487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10487.1 Public Homo sapiens 16 CLDN9 22 109 92 CCDS HistoryNCBI Gene:9080Re-query CCDS DB by CCDS ID:10487.1Re-query CCDS DB by GeneID:9080See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000445369.2 ENSP00000398017.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445369.2Link to Ensembl Protein Viewer:ENSP00000398017.2Re-query CCDS DB by Nucleotide ID:ENST00000445369Re-query CCDS DB by Protein ID:ENSP00000398017
Original member NCBI NM_020982.3 NP_066192.1 Updated not alive Link to Nucleotide Sequence:NM_020982.3Link to Protein Sequence:NP_066192.1Re-query CCDS DB by Nucleotide ID:NM_020982Re-query CCDS DB by Protein ID:NP_066192
Current member NCBI NM_020982.4 NP_066192.1 Accepted alive Link to Nucleotide Sequence:NM_020982.4Link to Protein Sequence:NP_066192.1Re-query CCDS DB by Nucleotide ID:NM_020982Re-query CCDS DB by Protein ID:NP_066192Link to BLAST:NP_066192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066192.1 217 O95484 217 100% 0 0

Chromosomal Locations for CCDS 10487.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3013363 3014016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCTTCGACCGGCTTAGAACTGCTGGGCATGACCCTGGCTGTGCTGGGCTGGCTGGGGACCCTGGTGT
CC
TGCGCCCTGCCCCTGTGGAAGGTGACCGCCTTCATCGGCAACAGCATCGTGGTGGCCCAGGTGGTGTG
G
GAGGGCCTGTGGATGTCCTGCGTGGTGCAGAGCACGGGCCAGATGCAGTGCAAGGTGTACGACTCACTG
CTG
GCTCTGCCGCAGGACCTGCAGGCCGCACGTGCCCTCTGTGTCATTGCCCTCCTGCTGGCCCTGCTTG
GC
CTCCTGGTGGCCATCACAGGTGCCCAGTGTACCACGTGTGTGGAGGACGAAGGTGCCAAGGCCCGTAT
C
GTGCTCACCGCGGGGGTCATCCTCCTCCTCGCCGGCATCCTGGTGCTCATCCCTGTGTGCTGGACGGCG
CAC
GCCATCATCCAGGACTTCTACAACCCCCTGGTGGCTGAGGCCCTCAAGCGGGAGCTGGGGGCCTCCC
TC
TACCTGGGCTGGGCGGCGGCTGCACTGCTTATGCTGGGCGGGGGGCTCCTCTGCTGCACGTGCCCCCC
G
CCCCAGGTCGAGCGGCCCCGCGGACCTCGGCTGGGCTACTCCATCCCCTCCCGCTCGGGTGCATCTGGA
CTG
GACAAGAGGGACTACGTGTGA


Translation (217 aa):
MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSL
L
ALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVILLLAGILVLIPVCWTA
H
AIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPPQVERPRGPRLGYSIPSRSGASG
L
DKRDYV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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