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Report for CCDS12364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12364.1 Public Homo sapiens 19 B3GNT3 22 109 92 CCDS HistoryNCBI Gene:10331Re-query CCDS DB by CCDS ID:12364.1Re-query CCDS DB by GeneID:10331See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000318683.6 ENSP00000321874.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318683.6Link to Ensembl Protein Viewer:ENSP00000321874.5Re-query CCDS DB by Nucleotide ID:ENST00000318683Re-query CCDS DB by Protein ID:ENSP00000321874
Original member Current member EBI,WTSI ENST00000595387.1 ENSP00000472638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595387.1Link to Ensembl Protein Viewer:ENSP00000472638.1Re-query CCDS DB by Nucleotide ID:ENST00000595387Re-query CCDS DB by Protein ID:ENSP00000472638
Original member NCBI NM_014256.3 NP_055071.2 Updated not alive Link to Nucleotide Sequence:NM_014256.3Link to Protein Sequence:NP_055071.2Re-query CCDS DB by Nucleotide ID:NM_014256Re-query CCDS DB by Protein ID:NP_055071
Current member NCBI NM_014256.4 NP_055071.2 Accepted alive Link to Nucleotide Sequence:NM_014256.4Link to Protein Sequence:NP_055071.2Re-query CCDS DB by Nucleotide ID:NM_014256Re-query CCDS DB by Protein ID:NP_055071Link to BLAST:NP_055071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055071.2 372 Q9Y2A9 372 100% 0 0

Chromosomal Locations for CCDS 12364.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17807808 17808374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17811571 17812122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAAGTATCTCCGGCACCGGCGGCCCAATGCCACCCTCATTCTGGCCATCGGCGCTTTCACCCTCCTCC
TC
TTCAGTCTGCTAGTGTCACCACCCACCTGCAAGGTCCAGGAGCAGCCACCGGCGATCCCCGAGGCCCT
G
GCCTGGCCCACTCCACCCACCCGCCCAGCCCCGGCCCCGTGCCATGCCAACACCTCTATGGTCACCCAC
CCG
GACTTCGCCACGCAGCCGCAGCACGTTCAGAACTTCCTCCTGTACAGACACTGCCGCCACTTTCCCC
TG
CTGCAGGACGTGCCCCCCTCTAAGTGCGCGCAGCCGGTCTTCCTGCTGCTGGTGATCAAGTCCTCCCC
T
AGCAACTATGTGCGCCGCGAGCTGCTGCGGCGCACGTGGGGCCGCGAGCGCAAGGTACGGGGTTTGCAG
CTG
CGCCTCCTCTTCCTGGTGGGCACAGCCTCCAACCCGCACGAGGCCCGCAAGGTCAACCGGCTGCTGG
AG
CTGGAGGCACAGACTCACGGAGACATCCTGCAGTGGGACTTCCACGACTCCTTCTTCAACCTCACGCT
C
AAGCAGGTCCTGTTCTTACAGTGGCAGGAGACAAGGTGCGCCAACGCCAGCTTCGTGCTCAACGGGGAT
GAT
GACGTCTTTGCACACACAGACAACATGGTCTTCTACCTGCAGGACCATGACCCTGGCCGCCACCTCT
TC
GTGGGGCAACTGATCCAAAACGTGGGCCCCATCCGGGCTTTTTGGAGCAAGTACTATGTGCCAGAGGT
G
GTGACTCAGAATGAGCGGTACCCACCCTATTGTGGGGGTGGTGGCTTCTTGCTGTCCCGCTTCACGGCC
GCT
GCCCTGCGCCGTGCTGCCCATGTCTTGGACATCTTCCCCATTGATGATGTCTTCCTGGGTATGTGTC
TG
GAGCTTGAGGGACTGAAGCCTGCCTCCCACAGCGGCATCCGCACGTCTGGCGTGCGGGCTCCATCGCA
A
CGCCTGTCCTCCTTTGACCCCTGCTTCTACCGAGACCTGCTGCTGGTGCACCGCTTCCTACCTTATGAG
ATG
CTGCTCATGTGGGATGCGCTGAACCAGCCCAACCTCACCTGCGGCAATCAGACACAGATCTACTGA


Translation (372 aa):
MKYLRHRRPNATLILAIGAFTLLLFSLLVSPPTCKVQEQPPAIPEALAWPTPPTRPAPAPCHANTSMVTH
P
DFATQPQHVQNFLLYRHCRHFPLLQDVPPSKCAQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQ
L
RLLFLVGTASNPHEARKVNRLLELEAQTHGDILQWDFHDSFFNLTLKQ
VLFLQWQETRCANASFVLNGD
D
DVFAHTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFWSKYYVPEVVTQNERYPPYCGGGGFLLSRFTA
A
ALRRAAHVLDIFPIDDVFLGMCLELEGLKPASHSGIRTSGVRAPSQRLSSFDPCFYRDLLLVHRFLPYE
M
LLMWDALNQPNLTCGNQTQIY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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