NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90175.1 Public Mus musculus 7 Igsf23 23 108 98 CCDS HistoryNCBI Gene:70080Re-query CCDS DB by CCDS ID:90175.1Re-query CCDS DB by GeneID:70080See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208974.1 ENSMUSP00000147077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208974.1Link to Ensembl Protein Viewer:ENSMUSP00000147077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208974Re-query CCDS DB by Protein ID:ENSMUSP00000147077
Original member Current member NCBI NM_001364025.1 NP_001350954.1 Accepted alive Link to Nucleotide Sequence:NM_001364025.1Link to Protein Sequence:NP_001350954.1Re-query CCDS DB by Nucleotide ID:NM_001364025Re-query CCDS DB by Protein ID:NP_001350954Link to BLAST:NP_001350954.1

Chromosomal Locations for CCDS 90175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19938245 19938250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19939173 19939342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19941750 19942019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19944704 19944863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGAAAGGAGCCAACACCCAGCTGCCTGTCCCCGGAGCTCTTGAGAAAGATCTCAGCACTTCTTGGTTCC
CAGAGCTTGAAGCCCAGCCGCCAACCTCATCCTCTCCCAAGGGCCTCCCAGGACGTCCTCGCACTAGCCA
AGAGGTGCCGAACGCTGAAGACAATCCCAGCCTGATCCCACTGGTGACCTTCCCCGAGTCTTCCAAGGGC
ATAATCTACAGTGACCTTAACTACTCTGTGATCCTGCAGTGGATGGTGACCATGAACCCAGAGCCTGTGC
TGAGCTGGACCTTTGATGGAAAGCCATGTGGAACTGGGGAGAAGCTATTTATCCGGCGACTGTCCCCAGA
TCAGCTGGGCACTTACCTGTGCATAGCCAGGAACACAGACAAAGAGCTGGTCTCTGAGCCGGTGACTGTC
TCATTGAGCCCAGCCACCGGGGCTCCCACAGTTCCGGCTCCCACAGTTGCCTATCCCATGAAGCCGAACG
ACTACATGTCGGTCTCAGGAGGATCCGCCATAGCCCTCATCGTAGCGGCCACCATCGGAGGATTAGTCCT
GATCGGATCTGTCTGCTTCTATATACTGCTGGCACTTAAGAAATAA

Translation (201 aa):
MKGANTQLPVPGALEKDLSTSWFPELEAQPPTSSSPKGLPGRPRTSQEVPNAEDNPSLIPLVTFPESSKG
IIYSDLNYSVILQWMVTMNPEPVLSWTFDGKPCGTGEKLFIRRLSPDQLGTYLCIARNTDKELVSEPVTV
SLSPATGAPTVPAPTVAYPMKPNDYMSVSGGSAIALIVAATIGGLVLIGSVCFYILLALKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH