NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89743.1 Public Mus musculus 4 Slc44a1 23 108 98 CCDS HistoryNCBI Gene:100434Re-query CCDS DB by CCDS ID:89743.1Re-query CCDS DB by GeneID:100434See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107651.8 ENSMUSP00000103278.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107651.8Link to Ensembl Protein Viewer:ENSMUSP00000103278.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107651Re-query CCDS DB by Protein ID:ENSMUSP00000103278
Current member NCBI NM_001374697.1 NP_001361626.1 Accepted alive Link to Nucleotide Sequence:NM_001374697.1Link to Protein Sequence:NP_001361626.1Re-query CCDS DB by Nucleotide ID:NM_001374697Re-query CCDS DB by Protein ID:NP_001361626Link to BLAST:NP_001361626.1

Chromosomal Locations for CCDS 89743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 53440684 53440716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53481464 53481553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53491388 53491530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53517545 53517681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53528655 53528748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53536323 53536492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53538390 53538479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53541301 53541440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53542365 53542551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53543542 53543707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53544541 53544697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53545685 53545768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53553486 53553623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53560915 53561151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53563141 53563221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53565397 53565420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGGCTGCTGCAGCTCCGCCTCCGCCGCGCAGAGCTCCAAACGAGAATGGAAGCCATTGGAAGACCGTA
GCTGCACAGACATACCATGGCTGCTTCTCTTTGTTCTCTTCTGCATTGGGATGGGATTTATTTGTGGCTT
TTCAGTAGCAACAGGTGCAGCAGCAAGACTAGTGTCAGGATACGACAGCTATGGAAATATCTGTGGGCAG
AGAAATGCAAAACTGGAAGCAATACCGAACAGTGGTCTGGACCACACCCACCGGAAGTATGTGTTCTTTT
TGGACCCATGCAACCTGGACTTGATAAACAGGAAGATCAAGTCTATAGCACTGTGCGTAGCAGCATGTCC
TCGACAGGAGTTGAAAACCTTGAGTGACGTCCAGAAGTTTGCAGAGATCAATGGCTCAGCACTATGTAGC
TACAACATAAAGCCTTCTGAATATACTCTGACTTCAAAATCCTCTGGCTTTTGCCCCAAGCTACCAGTAC
CAGCCAGTGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGC
AGAGGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACCAGC
AAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCTGTCCATGATCCTGATGGTGATTATCAGGT
ATATATCAAGAGTGCTAGTGTGGATTCTAACAGTTCTGGTCATACTGGGTTCACTTGGTGGCACGGGTGT
ATTATGGTGGCTGTATGCAAAGCAAAGAAGGTCCCCCAAAGAAGCAGTTATTCCTGAGCAGCTTCAGATA
GCTGAGGACAATCTGCGGGCGCTCCTCATCTATGCCATTTCAGCGACAGTGTTCACTGTCATTCTCTTCC
TGATCATGCTGGTTATGCGCAAGCGTGTGGCTCTCACCATCGCCTTGTTCCACGTGGCTGGCAAGGTCTT
CATACACTTGCCTCTGTTAGTCTTCCAGCCCTTCTGGACGTTTTTTGCTCTCGTCTTATTTTGGGCATAC
TGGATAATGACACTTCTCTTCCTTGGCACTACTGGCAGTGCTGTTCAGAATGAGCAAGGCTTCGTGGAGT
ACAAAATCTCCGGGCCTTTGCAGTACATGTGGTGGTACCACGTGGTTGGCCTGATTTGGATCAGTGAGTT
CATTCTCGCCTGTCAGCAGATGACTGTGGCAGGAGCTGTGGTAACATACTACTTTACTAGGGATAAACGG
AATTTGCCTTTCACACCTATTCTGGCATCAGTGAATCGCCTTATTCGTTACCACCTCGGTACTGTGGCAA
AAGGATCCTTCATTATCACCCTCGTCAAAATCCCCAGGATGGTCCTCATGTATATCCACAGTCAGCTCAA
AGGGAAGGAAAACGCTTGTGCACGATGCATGCTGAAATCCTGCATTTGCTGCCTTTGGTGTCTTGAAAAG
TGCCTGAGCTACTTAAACCAGAATGCATACACAGCCACAGCTATCAATAGCACCAACTTCTGCACCTCAG
CAAAGGATGCCTTCGTCATTCTAGTGGAGAACGCTCTGCGAGTGGCTGCCATCAACACAGTGGGGGACTT
CATGCTGTTCCTAGGCAAGGTGCTGATAGTCTGCAGCACCGGTTTGGCTGGGATTATGCTGCTCAACTAC
CAGCAAGATTACACAGTATGGGTGCTGCCTCTGATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATT
GCTTCCTGTCCATTTACGAAATGGTAGTGGATGTATTGTTCTTGTGTTTTGCCATTGATACAAAATACAA
TGATGGGAGCCCTGGCCGAGAATTCTATATGGACAAAGTGCTGATGGAGTTTGTGGAAAACAGTAGGAAA
GCAATGAAAGAAGCCGGCAAAGGAGGCGCTGCGGACGCCCGAGAGCTAAAGCCGATGGCTTCGGGAGCAA
GTTCTGCTTGA

Translation (656 aa):
MGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQ
RNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVAACPRQELKTLSDVQKFAEINGSALCS
YNIKPSEYTLTSKSSGFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTS
KEIILGLCLLSLVLSMILMVIIRYISRVLVWILTVLVILGSLGGTGVLWWLYAKQRRSPKEAVIPEQLQI
AEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAY
WIMTLLFLGTTGSAVQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKR
NLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMVLMYIHSQLKGKENACARCMLKSCICCLWCLEK
CLSYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNY
QQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRK
AMKEAGKGGAADARELKPMASGASSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH