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Report for CCDS88225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88225.1 Public Mus musculus 11 Abcc3 23 108 98 CCDS HistoryNCBI Gene:76408Re-query CCDS DB by CCDS ID:88225.1Re-query CCDS DB by GeneID:76408See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178136.7 ENSMUSP00000136343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178136.7Link to Ensembl Protein Viewer:ENSMUSP00000136343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178136Re-query CCDS DB by Protein ID:ENSMUSP00000136343
Original member Current member NCBI NM_001363187.1 NP_001350116.1 Accepted alive Link to Nucleotide Sequence:NM_001363187.1Link to Protein Sequence:NP_001350116.1Re-query CCDS DB by Nucleotide ID:NM_001363187Re-query CCDS DB by Protein ID:NP_001350116Link to BLAST:NP_001350116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350116.1 1523 B2RX12-1 1523 100% 0 0

Chromosomal Locations for CCDS 88225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94343667 94343775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94345947 94346141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94350936 94351102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94351799 94351957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94352080 94352226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94355013 94355114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94356973 94357099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94357207 94357406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94358752 94359062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94359241 94359448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94359527 94359674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94359829 94359943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94361172 94361349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94361650 94361817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94363433 94363609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94363697 94363823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94364042 94364108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94364352 94364439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94364773 94364919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94365026 94365229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94367590 94367682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94368181 94368342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94368441 94368618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94371619 94371807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94372873 94373004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94373627 94373688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94373909 94374034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94374722 94374859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94375067 94375192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94375541 94375717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94392871 94392915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4572 nt):
ATGGACCGCCTGTGCGGCTCCGGAGAGCTGGGCTCCAAGTTCTGGGACTCCAACCTGTCTATATATACCA
ACACTCCGGACCTCACACCCTGTTTCCAGAACTCCTTGCTGGCCTGGGTCCCCTGCATCTACCTGTGGGC
TGCCTTGCCCTGCTACCTGTTTTACCTGAGACACCATCAGCTCGGCTACATAGTCCTCTCATGGTTATCC
AGGCTCAAGACGGCCCTCGGTGTTCTGCTGTGGTGTGTCTCATGGGTGGACCTGTTCTATTCCTTCCACG
GCCTGATCCATGGCTCATCCCCTGCTCCTGTCTTCTTTGTCACACCCTTGGTGGTGGGGATCACCATGCT
GCTGGCCACTTTGCTAATCCAGTACGAGCGGCTTCGGGGGGTACAGTCTTCGGGAGTGCTCATCATATTC
TGGCTCCTGTGTGTGATCTGTGCCATCATCCCCTTCCGTTCCAAGATCCTCTCAGCTTTGGCAGAGGGTA
AAATCTTGGATCCGTTCCGGTTCACCACTTTCTACATCTACTTTGCCCTGGTGTTCTGTGCCCTCATCCT
GTCCTGCTTCAAGGAGAAGCCGCCTTTGTTCTCCCCGGAGAATCTTGACACAAATCCTTGCCCAGAGGCC
AGCGCTGGCTTCTTTTCCCGCTTGTCTTTCTGGTGGTTCACAAGGCTTGCCATCCTTGGCTACCGACGTC
CCCTGGAGGACCGTGACCTCTGGTCTCTGTCTGAGGAGGACTGCTCTCACAAGGTGGTACAACGGCTGCT
GGAAGCATGGCAAAAGCAGCAGAACCAAGCATCAAGGTCCCAGACGGCAACAGCTGAGCCAAAGATCCCA
GGTGAGGATGCGGTCCTACTGAAGCCCCGACCCAAGTCCAAGCAGCCTTCCTTTCTGAGGGCTTTGGTGA
GAACCTTCACCTCCAGCTTGCTCATGAGTGCCTGTTTCAACCTGATCCAGAACCTACTCGGCTTCGTCAA
CCCACAGCTGCTCAGTATACTCATCAGGTTTATTTCTGACCCCACGGCCCCCACCTGGTGGGGCTTCTTG
CTGGCCGGACTGATGTTCCTGAGCTCCACCATGCAGACATTGATCTTACACCAATATTACCACTGCATCT
TTGTGATGGCCTTGAGGCTACGGACTGCTATTATAGGTGTCATCTACAGGAAGGCTCTGGTCATCACCAA
CTCAGTCAAACGGGAGTCCACTGTGGGAGAAATGGTCAACCTCATGTCAGTGGATGCTCAGCGCTTCATG
GATGTCTCCCCTTTCATCAATCTGCTGTGGTCTGCACCTTTGCAGGTCATCCTGGCAATATACTTCCTCT
GGCAGATCCTGGGCCCATCAGCTCTGGCTGGAGTGGCTGTGATAGTCTTGCTGATACCACTCAATGGAGC
TGTGTCCATGAAGATGAAGACCTACCAGGTAAAGCAAATGAAGTTCAAGGACTCCCGCATCAAGCTGATG
AGCGAGATCCTGAACGGCATCAAAGTGCTCAAGCTGTACGCTTGGGAGCCCAGCTTCTTGGAGCAGGTGA
AAGGGATCAGGCAGAGTGAACTTCAGCTGCTCCGGAAGGGGGCCTACCTGCAGGCCATCTCCACCTTCAT
CTGGATCTGCACCCCATTTCTGGTGACCCTGATCACCCTCGGAGTGTACGTGTATGTGGACGAGAGCAAT
GTACTGGATGCCGAGAAGGCCTTTGTGTCCCTGTCTTTGTTCAATATCTTAAAGATCCCCCTCAACATGC
TGCCTCAGTTAATCAGTGGACTGACCCAGGCCAGCGTGTCTCTGAAACGGATCCAGGATTTCCTGAACCA
AAATGAACTTGACCCCCAATGTGTGGAAAGAAAGACCATCTCCCCAGGCTACGCCATCACCATACACAAC
GGCACCTTCACCTGGGCCCAGGACCTGCCGCCCACCCTGCACAGCCTAAACATTCAAATCCCGAAGGGGG
CATTGGTGGCTGTGGTGGGACCTGTGGGCTGTGGGAAGTCTTCTCTGGTGTCTGCCTTACTCGGAGAGAT
GGAGAAGCTGGAAGGTGTGGTGTCTGTAAAGGGCTCTGTGGCCTACGTGCCCCAGCAGGCATGGATCCAG
AACTGCACACTTCAGGAAAATGTGCTATTTGGCCAACCCATGAACCCCAAGCGCTACCAACAGGCTCTGG
AGACATGTGCCCTGCTAGCTGACCTAGATGTGCTTCCTGGTGGGGACCAGACAGAGATTGGAGAGAAGGG
TATTAACCTATCTGGAGGCCAGCGCCAACGGGTGAGTTTGGCCCGAGCTGTTTATAGTGATGCCAACATT
TTTTTGCTGGATGACCCACTGTCGGCTGTGGACTCTCATGTGGCGAAGCATATCTTCGACCAAGTGATTG
GACCAGAAGGTGTGCTGGCAGGCAAGACTCGGGTGCTGGTAACTCATGGCATCAGCTTCCTGCCCCAGAC
GGACTTTATCATTGTGCTTGCTGGTGGACAGGTGTCTGAGATGGGCCACTACTCGGCCCTCCTGCAGCAT
GATGGCTCCTTTGCCAACTTCCTCCGAAACTACGCACCAGATGAAGACCAGGAGGACCATGAAGCAGCCT
TGCAAAATGCAAATGAGGAGGTACTCCTGCTCGAAGACACACTCAGCACCCACACAGACCTGACAGACAA
TGAGCCAGCCATCTACGAGGTCCGCAAGCAGTTCATGAGAGAGATGAGCTCCTTGTCTTCTGAAGGGGAG
GTCCAGAACCGGACTATGCCCAAGAAACACACAAATTCATTGGAGAAGGAGGCGCTGGTGACAAAGACTA
AGGAGACTGGCGCATTAATCAAAGAGGAGATAGCAGAGACAGGCAATGTGAAGCTGAGTGTGTACTGGGA
TTATGCCAAGTCTATGGGACTCTGTACCACGCTATCTATCTGCCTCCTGTATGGTGGCCAAAGCGCAGCT
GCTATCGGAGCCAATGTGTGGCTCAGCGCCTGGAGCAATGATGCGGAGGAACATGGCCAGCAGAACAAGA
CCTCCGTAAGGCTCGGTGTCTACGCCGCCCTAGGGATACTGCAAGGGCTCCTGGTCATGCTGTCAGCTTT
CACCATGGTGGTCGGCGCGATCCAGGCTGCCCGCCTGCTGCACGAAGCTCTGCTGCACAACAAGATTCGT
TCCCCTCAGTCCTTCTTTGACACCACGCCCTCGGGCCGCATCCTCAACCGTTTCTCCAAGGACATATACG
TCATCGACGAGGTTCTGGCCCCCACCATCCTCATGCTGTTGAATTCCTTCTTCACATCCATCTCCACCAT
CATGGTCATCGTGGCCAGCACGCCGCTCTTCATGGTGGTTGTCTTGCCCCTGGCTGTGCTCTATGGCTTT
GTGCAGCGCTTCTATGTGGCCACATCACGGCAGCTCAAGCGGCTGGAATCCATCAGCCGCTCACCCATCT
TCTCCCACTTTTCGGAGACAGTAACGGGCACCAGTGTCATTCGGGCCTATGGCCGAATCCAAGACTTCAA
GGTCCTCAGTGATACTAAGGTGGACAACAACCAGAAAAGCAGTTATCCCTACATTGCCTCCAATCGATGG
CTGGGGGTCCACGTGGAGTTTGTGGGGAACTGCGTGGTGCTCTTTGCCGCACTGTTTGCAGTGATCGGGA
GAAACAGCTTGAATCCAGGGCTTGTGGGTCTTTCTGTGTCCTATGCCTTACAGGTGACCATGGCTTTGAA
TTGGATGATACGAATGATATCCGACTTGGAGTCTAATATCATAGCTGTGGAGAGAGTCAAGGAGTACTCT
AAGACCAAGACTGAGGCCCCCTGGGTGGTGGAGAGCAACCGCGCCCCGGAAGGCTGGCCCACGCGAGGAA
TGGTGGAGTTCCGGAACTATTCAGTGCGGTACCGGCCTGGCCTCGAGTTGGTGCTGAAGAACGTGACTGT
TCATGTGCAGGGTGGGGAGAAGGTAGGCATTGTGGGCCGCACTGGGGCTGGCAAATCTTCCATGACTCTT
TGCCTGTTCCGAATCCTGGAGGCCGCAGAGGGTGAGATCGTCATTGATGGGCTCAACGTGGCACACATTG
GCCTCCACGACCTGCGCTCTCAGCTCACCATCATCCCTCAGGACCCCATCCTGTTCTCGGGCACCCTGCG
TATGAACTTAGATCCCTTTGGCCGATACTCGGAGGAGGACATCTGGAGGGCCCTGGAGCTATCCCACCTG
AACACGTTCGTGAGCAGCCAGCCAGCAGGCCTGGATTTCCAGTGCGCTGAGGGTGGGGATAATCTCAGTG
TTGGCCAGAGGCAGCTTGTATGCCTAGCCCGAGCCCTGCTCCGGAAGAGCCGAGTCCTGGTTTTAGACGA
GGCCACTGCTGCCATTGACTTGGAGACGGATGACCTCATCCAGGGCACCATCCGTACCCAGTTTGAAGAC
TGCACCGTACTGACCATCGCCCACCGGCTCAACACAATCATGGACTACAACAGGGTCCTGGTCTTGGACA
AAGGAGTAGTAGCTGAATTTGATTCTCCAGTCAACCTCATTGCGGCCGGAGGCATCTTCTATGGGATGGC
CAAGGATGCGGGACTTGCCTAG

Translation (1523 aa):
MDRLCGSGELGSKFWDSNLSIYTNTPDLTPCFQNSLLAWVPCIYLWAALPCYLFYLRHHQLGYIVLSWLS
RLKTALGVLLWCVSWVDLFYSFHGLIHGSSPAPVFFVTPLVVGITMLLATLLIQYERLRGVQSSGVLIIF
WLLCVICAIIPFRSKILSALAEGKILDPFRFTTFYIYFALVFCALILSCFKEKPPLFSPENLDTNPCPEA
SAGFFSRLSFWWFTRLAILGYRRPLEDRDLWSLSEEDCSHKVVQRLLEAWQKQQNQASRSQTATAEPKIP
GEDAVLLKPRPKSKQPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFL
LAGLMFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSVDAQRFM
DVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKTYQVKQMKFKDSRIKLM
SEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAISTFIWICTPFLVTLITLGVYVYVDESN
VLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQASVSLKRIQDFLNQNELDPQCVERKTISPGYAITIHN
GTFTWAQDLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQAWIQ
NCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQRVSLARAVYSDANI
FLLDDPLSAVDSHVAKHIFDQVIGPEGVLAGKTRVLVTHGISFLPQTDFIIVLAGGQVSEMGHYSALLQH
DGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLEDTLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGE
VQNRTMPKKHTNSLEKEALVTKTKETGALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAA
AIGANVWLSAWSNDAEEHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIR
SPQSFFDTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVLPLAVLYGF
VQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVDNNQKSSYPYIASNRW
LGVHVEFVGNCVVLFAALFAVIGRNSLNPGLVGLSVSYALQVTMALNWMIRMISDLESNIIAVERVKEYS
KTKTEAPWVVESNRAPEGWPTRGMVEFRNYSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTL
CLFRILEAAEGEIVIDGLNVAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHL
NTFVSSQPAGLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFED
CTVLTIAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLIAAGGIFYGMAKDAGLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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