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Report for CCDS85457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85457.1 Public Mus musculus 7 Sct 21 106 86 CCDS HistoryNCBI Gene:20287Re-query CCDS DB by CCDS ID:85457.1Re-query CCDS DB by GeneID:20287See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000211667 ENSMUSP00000147780 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211667Link to Ensembl Protein Viewer:ENSMUSP00000147780Re-query CCDS DB by Nucleotide ID:ENSMUST00000211667Re-query CCDS DB by Protein ID:ENSMUSP00000147780
Original member Current member EBI,WTSI OTTMUST00000147512 OTTMUSP00000076768 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000147512Link to Vega Protein Viewer:OTTMUSP00000076768Re-query CCDS DB by Nucleotide ID:OTTMUST00000147512Re-query CCDS DB by Protein ID:OTTMUSP00000076768
Original member Current member NCBI NM_001309439.1 NP_001296368.1 Accepted alive Link to Nucleotide Sequence:NM_001309439.1Link to Protein Sequence:NP_001296368.1Re-query CCDS DB by Nucleotide ID:NM_001309439Re-query CCDS DB by Protein ID:NP_001296368Link to BLAST:NP_001296368.1

Chromosomal Locations for CCDS 85457.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141278667 141278715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 141278833 141278934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 141279016 141279098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (234 nt):
ATGGAGCCTCCGCTGCCCACGCCGATGCTACTGCTGTTGCTGCTGCTGCTCTCCAGTTCCGCCGCGCTCC
CT
GCACCTCCCAGGACCCCAAGACACTCAGACGGAATGTTCACCAGCGAGCTCAGCCGCTTGCAGGACAG
T
GCCAGGCTGCAGCGCCTGCTGCAGGGTCTGGTGGGGAAGCGCAGGACACAGAAAATATCCCAGAGAACA
GCC
TGGCCCGGTCCAAGCCCTTAG


Translation (77 aa):
MEPPLPTPMLLLLLLLLSSSAALPAPPRTPRHSDGMFTSELSRLQDSARLQRLLQGLVGKRRTQKISQRT
A
WPGPSP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser