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Report for CCDS84883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84883.1 Public Mus musculus 5 Klhl5 23 108 98 CCDS HistoryNCBI Gene:71778Re-query CCDS DB by CCDS ID:84883.1Re-query CCDS DB by GeneID:71778See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204097.2 ENSMUSP00000144976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204097.2Link to Ensembl Protein Viewer:ENSMUSP00000144976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204097Re-query CCDS DB by Protein ID:ENSMUSP00000144976
Original member Current member NCBI NM_001347355.1 NP_001334284.1 Accepted alive Link to Nucleotide Sequence:NM_001347355.1Link to Protein Sequence:NP_001334284.1Re-query CCDS DB by Nucleotide ID:NM_001347355Re-query CCDS DB by Protein ID:NP_001334284Link to BLAST:NP_001334284.1

Chromosomal Locations for CCDS 84883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65141300 65141442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65143239 65143375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65144559 65144755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65148589 65148801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65156055 65156241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65158784 65159008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65161042 65161204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65162790 65163002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65164531 65164702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65166971 65167027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGAGCCATGCTCATCAGATGAATTCTTTCAAGCCCTTAACCATGCAGAGCAAACATTTAAAAAAATGG
AAAACTACTTGAGGCACAAGCAACTGTGTGACGTCATTTTAGTCGCTGGCGACCGCAGGATTCCAGCTCA
CAGACTGGTGCTGTCTTCCGTCTCAGATTATTTCGCTGCTATGTTTACTAATGATGTCAGGGAGGCGAGG
CAAGAGGAAATCAAAATGGAAGGTGTGGAGCCGAATTCCTTGTGGTCCTTAATTCAGTACGCGTACACAG
GCCGACTTGAGCTGAAGGAAGACAACATCGAGTGCTTGCTGTCCACAGCCTGCCTGCTCCAGCTCTCCCA
GGTGGTGGAAGCCTGCTGCAAGTTCTTGATGAAGCAGCTCCACCCGTCCAACTGCCTGGGGATTCGGTCC
TTCGCGGATGCCCAAGGCTGCACAGATCTGCATAAAGTGGCTCACAATTACACGATGGAACATTTCATGG
AAGTAATCAGGAACCAGGAGTTTGTGTTACTCCCAGCCAATGAGATCGCCAAGCTCTTGGCCAGCGATGA
CATGAACATCCCGAACGAGGAGACCATACTGAACGCGCTTCTCACCTGGGTCCGGCACGACCTGGAGCAG
AGGCGGAAGGATCTCAGTAGACTTTTGGCTTACATTAGGCTACCTCTCCTTGCGCCACAGTTCCTGGCAG
ACATGGAAAACAATGCACTTTTCCGGGATGACATTGAATGTCAGAAACTCATCATGGAAGCAATGAAGTA
CCATTTATTACCTGAGAGACGACCCATGTTGCAGAGTCCTCGGACAAAGCCTCGCAAGTCAACTGTTGGA
ACGTTATTTGCAGTTGGAGGGATGGATTCAACAAAGGGAGCAACAAGCATTGAGAAGTATGACCTCCGTA
CAAATATGTGGACTCCTGTGGCAAACATGAATGGGAGGAGGCTCCAATTCGGCGTCGCAGTCTTAGATGA
CAAACTGTACGTGGTCGGAGGGCGAGACGGACTGAAGACTCTGAACACCGTAGAGTGCTACAACCCCAAA
ACAAAAACCTGGAGTGTGATGCCACCTATGTCCACACACAGGCACGGGCTCGGCGTGGCTGTACTAGAAG
GCCCCATGTATGCAGTCGGAGGGCACGACGGCTGGAGCTACCTGAATACTGTGGAGCGATGGGACCCTCA
GGCCCGCCAGTGGAATTTTGTTGCCACTATGTCCACCCCCAGGAGCACAGTAGGCGTGGCGGTACTAAGT
GGAAAACTCTATGCAGTTGGTGGTCGCGATGGGAGCTCTTGCCTCAAGTCAGTAGAATGCTTTGACCCTC
ATACCAATAAATGGACACTGTGTGCCCAGATGTCAAAACGAAGAGGCGGAGTAGGAGTCACAACCTGGAA
CGGGCTGCTGTATGCCATTGGGGGACACGACGCTCCCACATCCAATTTGACCTCCAGGCTCTCAGACTGT
GTGGAGAGATATGACCCCAAAACAGACGTGTGGACAGCAGTGGCATCCATGAGCGTTAGCAGAGACGCGG
TGGGCGTGTGTCTACTTGGTGACAAGCTGTATGCTGTCGGGGGTTATGACGGACAGACCTACCTGAACAT
AGTGGAGGCTTACGACCCCCAGACCAACGAATGGACCCAGGTTGCTCCGCTGTGCCTAGGAAGAGCTGGA
GCCTGTGTTGTGACTGTGAAGATATGA

Translation (568 aa):
MEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREAR
QEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRS
FADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQ
RRKDLSRLLAYIRLPLLAPQFLADMENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVG
TLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPK
TKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLS
GKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDC
VERYDPKTDVWTAVASMSVSRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAG
ACVVTVKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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