NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84312.1 Public Mus musculus 17 H2-M2 23 108 98 CCDS HistoryNCBI Gene:14990Re-query CCDS DB by CCDS ID:84312.1Re-query CCDS DB by GeneID:14990See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171139.2 ENSMUSP00000131297.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171139.2Link to Ensembl Protein Viewer:ENSMUSP00000131297.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171139Re-query CCDS DB by Protein ID:ENSMUSP00000131297
Original member Current member NCBI NM_001347387.1 NP_001334316.1 Accepted alive Link to Nucleotide Sequence:NM_001347387.1Link to Protein Sequence:NP_001334316.1Re-query CCDS DB by Nucleotide ID:NM_001347387Re-query CCDS DB by Protein ID:NP_001334316Link to BLAST:NP_001334316.1

Chromosomal Locations for CCDS 84312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37481226 37481350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37481472 37481747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37482483 37482758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37482977 37483246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37483445 37483529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGAGACTTCAGCATTCTTCACTCTCCTCTTCACTCTCTACCTGCTGCTTGGGGCTTCCCTTGCCCTGG
CACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTTCGACATCGCAGTGTCAAGACCTGGCCTAGAGGA
GACCCACTACATGACTGTTGGCTATGTGGATGACACAGAGTTTGTGCATTTTGACAATGAGGCTGAGAAT
CCGAGGTTTGAGCCCCGAGTGCCTTGGATGGAACAGATGGGACAGAAGTACTGGGATGACCAGACACGCA
TTGCGAAAGCTGCAGAACAGCAGATTAGAGTGTACTTTCAGAAACTGCGAGACTACTACAACCAGAGCCA
GAACAGTTCTCACACCATCCAAAGGATGACTGGCTGCTACATTGGACCAGACGGGCACCTACTTCACGCA
TACCGTCAGTTTGGTTATGATGGGCAAGATTACCTCACTCTGAATGAAGATCTGAGCACCTGGACTGCAG
CAGATGCGGCAGCTGAGATCACCCGTAGAGAGTGGGAGGCAACTAATGTGGCTGAGTTCTGGAGGGTCTA
CTTGGAGGGCCCTTGCATGGTGTGGCTCTTTAAATACCTGACAGTGGGAAATGAGACTCTACTGCGCACA
GAGCCCCCAAAGGCATATGTGACCCATCACCCCAGACCTGAAGGTGATGTCACCCTGAGGTGCTGGGCCC
TGGGTTTCTACCCTTCTGACATCATCATGATCTGGCAAAGAGATGGGGAGGACCAGACCCAGGACATGGA
TGTTATTGAGACCAGACCTGCAGGGGATGGAACCTTCCAGAAGTGGGTAGCTGTGGTGGTGCCTTCTGGG
AAGGAGCAGAATTACACATGCCATGTGGCTCATGAGGGACTGCCTGAGCCCCTCACCCTGAGATGGAGTA
GACCTCCTCAGTCTTTCATTTTCATCATAATAGTTGCTGTTGGCCTGGTTCTCCTGGGAGCTTCAGTGGC
TACTCTTGTCATGTGGAAGAAGAGCTCGGGTGGGGAAAGGGGCAGCCTCTGA

Translation (343 aa):
METSAFFTLLFTLYLLLGASLALAQTFKGSHSLRYFDIAVSRPGLEETHYMTVGYVDDTEFVHFDNEAEN
PRFEPRVPWMEQMGQKYWDDQTRIAKAAEQQIRVYFQKLRDYYNQSQNSSHTIQRMTGCYIGPDGHLLHA
YRQFGYDGQDYLTLNEDLSTWTAADAAAEITRREWEATNVAEFWRVYLEGPCMVWLFKYLTVGNETLLRT
EPPKAYVTHHPRPEGDVTLRCWALGFYPSDIIMIWQRDGEDQTQDMDVIETRPAGDGTFQKWVAVVVPSG
KEQNYTCHVAHEGLPEPLTLRWSRPPQSFIFIIIVAVGLVLLGASVATLVMWKKSSGGERGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH