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Report for CCDS80720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80720.1 Public Mus musculus 7 Tulp2 23 108 98 CCDS HistoryNCBI Gene:56734Re-query CCDS DB by CCDS ID:80720.1Re-query CCDS DB by GeneID:56734See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085331.13 ENSMUSP00000082438.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085331.13Link to Ensembl Protein Viewer:ENSMUSP00000082438.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085331Re-query CCDS DB by Protein ID:ENSMUSP00000082438
Original member Current member NCBI NM_001290998.2 NP_001277927.1 Accepted alive Link to Nucleotide Sequence:NM_001290998.2Link to Protein Sequence:NP_001277927.1Re-query CCDS DB by Nucleotide ID:NM_001290998Re-query CCDS DB by Protein ID:NP_001277927Link to BLAST:NP_001277927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277927.1 438 P46686-4 438 100% 0 0

Chromosomal Locations for CCDS 80720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45516316 45516340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45516516 45516686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45517780 45517967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45518586 45518885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45519731 45519843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520740 45520854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520943 45521041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45521844 45522015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45522223 45522356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAGCTATGTCGCAGATGGGAGTGTATACACTCGGGGCAACGGCCCTGCGGTCCGTCATCATCTTTGCT
GGCTTCCAGACAGCTCCGATTCAGACGTGGAGGAAGTGACCATGGAAGACATCCCCGTCATCTCCCGACC
TCCCCAGACGAATCTGGCAAACCTACGCAGGGGCTGGTTAGCCTCCCCAGGACCCGGGATCAGTCAAGAA
GAAAAAGAAGAAGAGGTTGGATCCACGGATGCCAGAGTTGAAGACAAGACACCCAGCCCAGACCCAGACC
CAGACCCTACCGTGAACTCTGACGGAGATCATGGAGACCTGGCACCCTGCAAGGTGGAAGAAAACACAGC
CCAGAAGAATACAGAAACAGCCTCTGGCATCGGGGATGAAGACCGGGAGAAGGGAGAGGTCACAGAGTCT
ACAGAGACAAACTATGCCCCAGTGGCATCCAAGGTTTTGCAAGGCGACGATGGTGACGCCAGCAACCACA
ATGCCTGGAACATGACCTGCCCCCAGCCTCGCATTCCCGGCCCTCGGCTCGGGGAGGACATGGAAGCATA
CGTGTTGCTCCCTGCACCCCGAGACCACATGGTGCAGTGCCGCATCGTCCGAAACAAGCACGGCATGGAC
AAGGGGATGTTCCCTTCCTACTACCTCTACCTGGAGGCCGAGGATGGTGTAGCACATTTCCTTCTGGCTG
GGCGGAAAAGGAAAAGAAGCAAAACTTCAAATTATCTCATCTCCCTGGACCCCAAAGACATGTCTCGCAA
TGGGAGCAACTTTGTAGGCAAAGTTAGATCCAATGTCTTGGGCACGAAATTCACCATCTTCGATAATGGG
GTGAACCCTGAGCGGAGTTACTGGGTTCCAGACAGTGCCCGGATCAGAGAGGAGCTGGGAGTCGTCTGTT
ATGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACTGTGATCCTTCCAGGAATGGACAGCCG
GAAGCAGAGGATGAAAGTCCAGCCACAAAATGATCAGGATTCCATATTGAGTCGCGTACAGAAGGGCGCT
GGACACGGGCTGCTTCTACTGCAGAACAAGGCCCCATCGTGGAGCGACGAAAGCGGCGCATACGTACTCA
ATTTTCACGGTCGCGTCACGCGGGCTTCAGTCAAGAACTTCCAGATAGTGCACCCGGATGAACCCGACCA
CCTGGTGCTCCAGTTTGGCCGTGTGGCCCCAAACATATTCACGATGGATTTCCGATATCCTCTTTGCCCG
CTCCAAGCCTTCGCCATCTGCTTATCCAGTTTCGATGGGAAACTGGCGTGTGAGTAA

Translation (438 aa):
MSYVADGSVYTRGNGPAVRHHLCWLPDSSDSDVEEVTMEDIPVISRPPQTNLANLRRGWLASPGPGISQE
EKEEEVGSTDARVEDKTPSPDPDPDPTVNSDGDHGDLAPCKVEENTAQKNTETASGIGDEDREKGEVTES
TETNYAPVASKVLQGDDGDASNHNAWNMTCPQPRIPGPRLGEDMEAYVLLPAPRDHMVQCRIVRNKHGMD
KGMFPSYYLYLEAEDGVAHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRSNVLGTKFTIFDNG
VNPERSYWVPDSARIREELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQNDQDSILSRVQKGA
GHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCP
LQAFAICLSSFDGKLACE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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