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Report for CCDS80529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80529.1 Public Mus musculus 6 Tpk1 23 108 98 CCDS HistoryNCBI Gene:29807Re-query CCDS DB by CCDS ID:80529.1Re-query CCDS DB by GeneID:29807See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114644.7 ENSMUSP00000110291.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114644.7Link to Ensembl Protein Viewer:ENSMUSP00000110291.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114644Re-query CCDS DB by Protein ID:ENSMUSP00000110291
Original member Current member NCBI NM_001311111.1 NP_001298040.1 Accepted alive Link to Nucleotide Sequence:NM_001311111.1Link to Protein Sequence:NP_001298040.1Re-query CCDS DB by Nucleotide ID:NM_001311111Re-query CCDS DB by Protein ID:NP_001298040Link to BLAST:NP_001298040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298040.1 194 Q9R0M5-2 194 100% 0 0

Chromosomal Locations for CCDS 80529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43346782 43346900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43423621 43423732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43488875 43488970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43523884 43523956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43559943 43560012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43611314 43611385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43665760 43665802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGAGCATGCCTTTACCCCGTTGGAACCCCTGCTACCTACGGGGAACTTGAAATACTGCCTTGTGGTTC
TTAATCAGCCTTTGGATGCACGATTTCGCCATCTTTGGAAAAAAGCTCTCTTAAGAGCCTGTGCTGATGG
GGGTGCCAACCACTTATATGATCTCACTGAAGGAGAGAGAGAAAGCTTCTTGCCTGAATTCGTCAGTGGG
GACTTTGATTCTATTAGGCCTGAAGTCAAAGAGTACTACACCAAGAAGGGCTGTGATCTTATTTCAACTC
CTGACCAAGACCACACTGACTTTACCAAGTGTCTTCAAGTGCTCCAAAGGAAGATAGAGGAAAAGGAACT
GCAGGGGAAGCACAGGCTCCATGTAGACACTGGAATGGAAGGGAGCTGGTGTGGCCTGATTCCTGTTGGA
CAGCCTTGCAACCAGGTGACGACAACAGGCCTGAAATGGAACCTCACAAATGATGTTCTTGGCTTTGGAA
CACTGGTCAGTACTTCTAACACCTACGATGGGTCCGGCCTTGTCACTGTGGAAACTGACCACCCACTCCT
CTGGACCATGGCCATCAAGAGCTAA

Translation (194 aa):
MEHAFTPLEPLLPTGNLKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYDLTEGERESFLPEFVSG
DFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQGKHRLHVDTGMEGSWCGLIPVG
QPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTMAIKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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