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Report for CCDS79964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79964.1 Public Mus musculus 3 Chtop 23 108 98 CCDS HistoryNCBI Gene:66511Re-query CCDS DB by CCDS ID:79964.1Re-query CCDS DB by GeneID:66511See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107342.1 ENSMUSP00000102965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107342.1Link to Ensembl Protein Viewer:ENSMUSP00000102965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107342Re-query CCDS DB by Protein ID:ENSMUSP00000102965
Original member Current member NCBI NM_001293781.1 NP_001280710.1 Accepted alive Link to Nucleotide Sequence:NM_001293781.1Link to Protein Sequence:NP_001280710.1Re-query CCDS DB by Nucleotide ID:NM_001293781Re-query CCDS DB by Protein ID:NP_001280710Link to BLAST:NP_001280710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280710.1 177 Q9CY57-5 177 100% 0 0

Chromosomal Locations for CCDS 79964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90499902 90500107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90503096 90503279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90506108 90506251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTCGGGCTTCGATGCAGCAGCAGCAGCAGCTAGCCA
GTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAA
GCAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAATATCCAGGCACGGTTAGGCCGACCCATAGGTGCCCTG
GCCAGGGGAGCAATTGGAGGAAGAGGCCTACCCATAATCCAGAGAGGCTTGCCCCGAGGAGGACTACGTG
GGGGACGTGCTACCAGAACCCTGCTTAGGGGTGGGATGTCGCTCCGAGGTCGGGGTATGATAGGTCGGGG
AAGAGGGGGCTTTGGAGGCAGAGGCCGAGGTCGTGGCCGAGGGAGAGGTGCCCTCACTCGCCCTGTATTG
ACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACCTGGATGCTGAAT
TGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGA

Translation (177 aa):
MLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGAL
ARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALTRPVL
TKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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