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Report for CCDS78805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78805.1 Public Mus musculus 10 Nkain2 23 108 98 CCDS HistoryNCBI Gene:432450Re-query CCDS DB by CCDS ID:78805.1Re-query CCDS DB by GeneID:432450See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191234.6 ENSMUSP00000140463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191234.6Link to Ensembl Protein Viewer:ENSMUSP00000140463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191234Re-query CCDS DB by Protein ID:ENSMUSP00000140463
Original member Current member NCBI NM_001013411.2 NP_001013429.2 Accepted alive Link to Nucleotide Sequence:NM_001013411.2Link to Protein Sequence:NP_001013429.2Re-query CCDS DB by Nucleotide ID:NM_001013411Re-query CCDS DB by Protein ID:NP_001013429Link to BLAST:NP_001013429.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013429.2 208 Q4PNJ2-1 208 100% 0 0

Chromosomal Locations for CCDS 78805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31691678 31691687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31694332 31694413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31746502 31746562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31951119 31951319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32329765 32329845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32402236 32402373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32889643 32889696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGGTTATTGCAGTGGCAGGTGCACGCTTATCTTTATCTGTGGCATGCAACTGGTTTGTGTGCTAGAGA
GGCAAATATTTGATTTCCTTGGATATCAGTGGGCACCTATCCTGGCAAATTTTGTACATATAATCATCGT
CATCCTTGGGTTGTTTGGAACTATTCAATATAGACCTCGTTACGTAACAGGATATGCTGTCTGGCTAGTT
CTCTGGGTGACCTGGAATGTATTTGTTATCTGCTTCTATTTGGAGGCTGGAGATCTCTCAAAGGAAACAG
ACCTTATCCTGACATTTAATATTTCAATGCACCGATCTTGGTGGATGGAGAATGGACCAGGATGTATGGT
GACGTCTGTGACACCTGCCCCAGACTGGGCTCCAGAAGACCATCGCTACATCACTGTCTCAGGGTGTTTT
CTGGACTACCAATACATAGAAGTGGCTCATAGTTCCCTCCAGATTGTCCTCGCACTGGCGGGCTTCATCT
ATGCCTGTTATGTTGTGAGATGTATAACTGAAGAAGAGGACAGCTTTGACTTCATAGGTGGCTTTGATTC
TTATGGATACCAAGGGCCTCAGAAGACATCTCACTTACAACTTCAACCAATGTACATGTCAAAATAA

Translation (208 aa):
MGYCSGRCTLIFICGMQLVCVLERQIFDFLGYQWAPILANFVHIIIVILGLFGTIQYRPRYVTGYAVWLV
LWVTWNVFVICFYLEAGDLSKETDLILTFNISMHRSWWMENGPGCMVTSVTPAPDWAPEDHRYITVSGCF
LDYQYIEVAHSSLQIVLALAGFIYACYVVRCITEEEDSFDFIGGFDSYGYQGPQKTSHLQLQPMYMSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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