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Report for CCDS71462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71462.1 Public Mus musculus 4 Foxj3 23 108 98 CCDS HistoryNCBI Gene:230700Re-query CCDS DB by CCDS ID:71462.1Re-query CCDS DB by GeneID:230700See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106310.8 ENSMUSP00000101917.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106310.8Link to Ensembl Protein Viewer:ENSMUSP00000101917.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106310Re-query CCDS DB by Protein ID:ENSMUSP00000101917
Original member Current member NCBI NM_001290696.1 NP_001277625.1 Accepted alive Link to Nucleotide Sequence:NM_001290696.1Link to Protein Sequence:NP_001277625.1Re-query CCDS DB by Nucleotide ID:NM_001290696Re-query CCDS DB by Protein ID:NP_001277625Link to BLAST:NP_001277625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277625.1 589 Q8BUR3-2 589 100% 0 0

Chromosomal Locations for CCDS 71462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119560620 119560663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119573476 119573800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119585750 119585824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119602409 119602492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119616508 119616636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119619284 119619464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119619935 119620348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119621601 119621702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119623221 119623412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119624897 119625004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119626289 119626404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGGTTTGTATGGACAAGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCC
TAACATCTATGGACTGGTTACCCCAGCTCACCATGAGAGCAGCCATCCAGAAATCTGATGCTACACAAAA
TGCACATGGAACGGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACACTGGACCAGGAAGAA
GTCCAACAGCACAAAGATGGAAAACCTCCGTACAGCTATGCCAGCCTCATCACATTTGCAATTAATAGCT
CACCTAAAAAGAAGATGACATTAAGTGAGATTTACCAATGGATTTGTGATAACTTTCCGTATTATAGAGA
AGCTGGCAGTGGTTGGAAGAATTCTATACGACATAATCTGTCACTGAACAAATGTTTCCTTAAAGTGCCT
CGGTCCAAGGATGATCCCGGAAAGGGTTCTTACTGGGCAATAGACACCAATCCGAAGGAAGACACGCTGC
CTACTCGGCCAAAGAAGAGGGCAAGATCCGTAGAACGGGTAACATTGTACAACGCTGACCAGGATGGTAG
TGATAGCCCTCGAAGCAGCCTTAACAACAGTCTCTCAGACCAGAGTTTGGCGTCTGTTAATTTGAACAGT
GTTGGAAGTGTACATAGTTATACACCGGTCACTAACCATCCAGAACCAGTCTCTCAGCCATTAACACCTC
AGCAGCAGCAGCAGCCACAGTACAACCTTCCAGAACGAGAAAAACAACTCCTTTTCACAGAATACAATTT
TGAAGATCTCAGTGCCTCATTTCGGAGTCTTTATAAGTCAGTTTTTGAGCAGTCACTTAGTCAACAAGGT
TTAATGAGCATCCCTTCGGAATCTTCCCAACAGTCCCACACTTCATGTTCCTATCAACACTCTCCTAGCA
GTACAGTGACCTCTCACCCACACAGCAACCAAAGCAGCCTGCCCAACAATCACAGTGGCCTCAGTGCCAC
AGGTAGTAATTCGGTTGCACAGGTCTCGCTGTCCCACCCCCAGATGCACCCCCAGCCCTCTCCACATACA
CCCCATAGACCGCATGGTTTACCCCAGCACCCACAGCGTCCCCAGCACCCAGCACCACACCCACAGCAAC
ACAGCCAGCTACAGCCGCCTCACTCCCAGCACCCCCCTCCACATCAGCACATACAACACCATCCGAACCA
TCAGCATCAGACATTAGCACATCAGCCACCGCCACCCCCGCAACAGGTATCCTGTAATTCTGGTGTTTCA
AGTGATTGGTATGCAACACTCGATATGCTGAAGGAAAGCTGTCGAATTGCCAGCAGTGTTAACTGGTCAG
ATGTAGACCTTTCACAGTTCCAAGGTCTGATGGAGAGTATGAGGCAGGCGGATCTCAAGAACTGGTCATT
AGATCAGGTTCAGTTCGCTGATCTCTGTTCCTCTCTTAATCAGTTCTTCACACAGACTGGCCTTATCCAC
TCGCAGAGTAATGTTCCGCAGAATGTCTGTCACGGTGCCATGCACCCAGCAAAGCCTTCCCAACACATCG
GGGCAGGAAATTTGTACATAGATTCCAGGCAAAGTCTCCCTCCCTCAGTGATGCCACCCCCTGGTTATCC
TCATATTCCACAGGCGCTCAACACTCCAGGAACTACGATGGCAGGTCATCACGGAGCCATGAACCAGCAG
CACATGATGCCTTCCCAAGCCTTCCCGATGCGGCGCCCTCTGCCTCCAGATGACATCCAGGATGACTTTG
ATTGGGATTCAATAGTGTAG

Translation (589 aa):
MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNTTLDQEE
VQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVP
RSKDDPGKGSYWAIDTNPKEDTLPTRPKKRARSVERVTLYNADQDGSDSPRSSLNNSLSDQSLASVNLNS
VGSVHSYTPVTNHPEPVSQPLTPQQQQQPQYNLPEREKQLLFTEYNFEDLSASFRSLYKSVFEQSLSQQG
LMSIPSESSQQSHTSCSYQHSPSSTVTSHPHSNQSSLPNNHSGLSATGSNSVAQVSLSHPQMHPQPSPHT
PHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNHQHQTLAHQPPPPPQQVSCNSGVS
SDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIH
SQSNVPQNVCHGAMHPAKPSQHIGAGNLYIDSRQSLPPSVMPPPGYPHIPQALNTPGTTMAGHHGAMNQQ
HMMPSQAFPMRRPLPPDDIQDDFDWDSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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