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Report for CCDS71077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71077.1 Public Mus musculus 2 Hoxd8 23 108 98 CCDS HistoryNCBI Gene:15437Re-query CCDS DB by CCDS ID:71077.1Re-query CCDS DB by GeneID:15437See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074721.5 ENSMUSP00000088094.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074721.5Link to Ensembl Protein Viewer:ENSMUSP00000088094.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074721Re-query CCDS DB by Protein ID:ENSMUSP00000088094
Original member NCBI NM_001290730.1 NP_001277659.1 Updated not alive Link to Nucleotide Sequence:NM_001290730.1Link to Protein Sequence:NP_001277659.1Re-query CCDS DB by Nucleotide ID:NM_001290730Re-query CCDS DB by Protein ID:NP_001277659
Current member NCBI NM_001290730.2 NP_001277659.1 Accepted alive Link to Nucleotide Sequence:NM_001290730.2Link to Protein Sequence:NP_001277659.1Re-query CCDS DB by Nucleotide ID:NM_001290730Re-query CCDS DB by Protein ID:NP_001277659Link to BLAST:NP_001277659.1

Chromosomal Locations for CCDS 71077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74705548 74706118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74706517 74706812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAGCTCGTACTTCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGCGGCGGCGGCGGCTG
CGGCGGCCGCGGCGGGCGAGGCCATCAATCCCACTTACTACGACTGTCATTTTGCACCCGAGGTCAGCGG
CCGCCACGCCGCCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCTTCCCGCACGCGCACCCGCACCCG
CACCCGCACCCGTCGCCGCCGCCCGGGTGCGGCGGAGGGGGCGGCCCGGGGCCCGGCCAGGACTACTTCC
ACGCCGGCGCGGGCAGCCCGACCGCTGCCTACCAGGCCGCCCCACCTCCTCCGCACCCTCCGCCTCCGCC
GCCGCCTCCCCCCTGCGGCGGGATTGCCTGTCACGGGGAGCCCGCGAAGTTTTACGGATACGATAACTTA
CAGAGACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCA
GTGGTAATATTGGCGAGGACCCAGACCACTTAAATCAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGAT
GAGACCACAAGCTCCTGGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTCCAAACCCTAGAGTTGGAA
AAGGAATTCCTTTTTAACCCTTATCTGACCAGGAAGAGGAGAATCGAGGTCTCCCATACTCTGGCCCTCA
CGGAGAGACAGGTAAAAATCTGGTTCCAGAACAGGAGAATGAAATGGAAAAAGGAGAACAACAAAGACAA
GTTTCCTGCGTCCCGGCCGGAGGCAAAGGATGGAGACCCCAAAAAGGAAGTCTCGGGGCTGGAAGAAGAC
GGAGCTGAAGGCTGCCCCACAAATTAA

Translation (288 aa):
MSSYFVNPLYSKYKAAAAAAAAAAAAAAGEAINPTYYDCHFAPEVSGRHAAALQLYGNSAAGFPHAHPHP
HPHPSPPPGCGGGGGPGPGQDYFHAGAGSPTAAYQAAPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNL
QRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAPGRRRGRQTYSRFQTLELE
KEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKENNKDKFPASRPEAKDGDPKKEVSGLEED
GAEGCPTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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