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Report for CCDS59567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59567.1 Public Mus musculus 11 Calcoco2 23 108 98 CCDS HistoryNCBI Gene:76815Re-query CCDS DB by CCDS ID:59567.1Re-query CCDS DB by GeneID:76815See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068686.12 ENSMUSP00000087407.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068686.12Link to Ensembl Protein Viewer:ENSMUSP00000087407.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068686Re-query CCDS DB by Protein ID:ENSMUSP00000087407
Original member NCBI NM_001271018.1 NP_001257947.1 Updated not alive Link to Nucleotide Sequence:NM_001271018.1Link to Protein Sequence:NP_001257947.1Re-query CCDS DB by Nucleotide ID:NM_001271018Re-query CCDS DB by Protein ID:NP_001257947
Current member NCBI NM_001271018.2 NP_001257947.1 Accepted alive Link to Nucleotide Sequence:NM_001271018.2Link to Protein Sequence:NP_001257947.1Re-query CCDS DB by Nucleotide ID:NM_001271018Re-query CCDS DB by Protein ID:NP_001257947Link to BLAST:NP_001257947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257947.1 331 A2A6M5-1 331 100% 0 0

Chromosomal Locations for CCDS 59567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96099914 96100402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96102648 96102752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96103217 96103350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96103458 96103560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96107431 96107595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGACCAGTGCCCCATACCTACCTTGCTGGAACATGGCAACTTCTCTCAGGTCCTGTTTAACAATGTGG
AGAAGTTCTATGCTCCTAGAGGAGATATCATGTGCTATTACACCCTCACTGAAAAGTTCATCCCTCGACG
CAAGGACTGGATTGGCATCTTTAAAGTAGGGTGGAAGACCACTCAGGAGTATTATACCTTCATGTGGGCT
CCCTTGCCAAAAGACCAAAACAAGGATTCAGCCACACAGCAGGAAATCCAATTCAAAGCTTATTACCTTC
CCAAGGATGTGGAGCGCTACCAGTTCTGCTATGTGGATGAAGATGGTTTAGTCCGGGGAACAAGTGTCCC
TTTCCAGTTTTGTCCAGACCCTGACGAGGACATAATGGTTGTTATCAATAAGGAAAAGGTAGAAGAGATG
GAACAGCTCAGTGAGGAGCTTTACCAACAAAACCAGGAGCTGAAAGACAAGTACGCTGACCTCCATGAGC
AGCTACAGAGGAAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAATAAGACCTTAGAACACAAAGTGGA
AGAGAAGGCCTCCTGGGAGAAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAG
GCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCT
GGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGA
AGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGGAAGAGAAG
GCCTCCTGGGAGGAAGAGAAGGCCTCCTGGGAGAAAGAGAAGGCCTCCTGGGAGGAAGAGAAGGCCTCCT
GGGAGAAAGAGAAGGCCCCCTGGGAGGTAGAGAAGGCCCCCTGGAAGGAAGTGAAGGCCTATTGGTGGAA
TGATCTGCACCGGTGA

Translation (331 aa):
MDQCPIPTLLEHGNFSQVLFNNVEKFYAPRGDIMCYYTLTEKFIPRRKDWIGIFKVGWKTTQEYYTFMWA
PLPKDQNKDSATQQEIQFKAYYLPKDVERYQFCYVDEDGLVRGTSVPFQFCPDPDEDIMVVINKEKVEEM
EQLSEELYQQNQELKDKYADLHEQLQRKQVALEATQRVNKTLEHKVEEKASWEKEKASWEEEKASWEEEK
ASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEK
ASWEEEKASWEKEKASWEEEKASWEKEKAPWEVEKAPWKEVKAYWWNDLHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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