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Report for CCDS56748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56748.1 Public Mus musculus 10 Zdhhc17 23 108 98 CCDS HistoryNCBI Gene:320150Re-query CCDS DB by CCDS ID:56748.1Re-query CCDS DB by GeneID:320150See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041723.14 ENSMUSP00000043279.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041723.14Link to Ensembl Protein Viewer:ENSMUSP00000043279.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041723Re-query CCDS DB by Protein ID:ENSMUSP00000043279
Original member Current member NCBI NM_172554.2 NP_766142.2 Accepted alive Link to Nucleotide Sequence:NM_172554.2Link to Protein Sequence:NP_766142.2Re-query CCDS DB by Nucleotide ID:NM_172554Re-query CCDS DB by Protein ID:NP_766142Link to BLAST:NP_766142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766142.2 632 Q80TN5-1 632 100% 0 0

Chromosomal Locations for CCDS 56748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 110944393 110944531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110945469 110945563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110946167 110946324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110947299 110947382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110948191 110948284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110949621 110949683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110950561 110950685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110955066 110955166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110956286 110956428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110961012 110961137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110967684 110967846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110968429 110968493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110973748 110973892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110974344 110974421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110981996 110982118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110985940 110986043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111009938 111010030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGCAGCGGGAGGAGGGATTTAACACCAAGATGGCGGACGGCCCGGATGAGTACGAGACCGAAACGGGCT
GCGTGCCCCTTCTCCACCCGGAGGAAATCAAACCACAGAGCCACTATAACCATGGCTATGGAGAACCTCT
TGGTCGGAAAACTCATATTGATGACTATAGCACATGGGACATCGTCAAGGCGACACAATATGGAATATAT
GAACGCTGCCGAGAATTGGTGGAAGCGGGTTACGATGTACGGCAACCAGACAAAGAAAATGTTACACTTC
TTCATTGGGCTGCCATCAATAACAGAATAGATTTAGTCAAATACTATATTTCGAAAGGTGCTATTGTGGA
TCAACTTGGAGGAGACCTGAATTCAACTCCGTTGCACTGGGCCACAAGACAAGGCCATTTATCCATGGTT
GTACAACTAATGAAATATGGTGCAGACCCCTCCTTAATTGATGGGGAAGGATGCAGCTGTATCCACTTGG
CTGCTCAGTTCGGACATACCTCAATTGTTGCTTATCTTATAGCAAAAGGACAGGATGTAGATATGATGGA
TCAGAATGGAATGACCCCTTTAATGTGGGCAGCTTATAGAACACATAGTGTGGATCCAACTAGATTGCTT
TTAACATTCAATGTTTCAGTTAACCTTGGTGACAAGTATCACAAAAACACTGCTCTGCACTGGGCAGTCC
TAGCAGGGAACACCACAGTCATTAGTCTTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAA
GGGTGAGTCAGCACTTGATTTGGCAAAGCAAAGAAAAAACGTGTGGATGATCAACCATTTGCAGGAGGCA
AGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGA
AAGTAATGCTGGGAACCCCATTCCTGGTGATCTGGCTGGTCGGGTTTATAGCAGACCTAGACATTGATTC
TTGGCTCATTAAAGGGTTAATGTATGGTGGCGTTTGGGCTACAGTGCAATTTCTTTCCAAGTCCTTCTTT
GACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACAT
GGTTCTTCTGGTTCTGGAATGATCTCAACTTCCTGTTCATCCACCTCCCCTTCCTTGCCAACAGCGTTGC
TCTTTTCTACAATTTTGGAAAGTCTTGGAAATCAGATCCAGGGATTATTAAAGCTACAGAAGAACAAAAG
AAAAAGACGATAGTTGAACTTGCAGAGACTGGAAGTCTGGACCTCAGTATATTCTGCAGTACCTGCTTGA
TTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAAATTTGATCACCATTG
CCCATGGGTGGGTAACTGTGTAGGTGCAGGCAACCATAGGTACTTTATGGGGTACCTGTTCTTCTTGCTT
TTCATGATCTGCTGGATGATCTATGGTTGTGTCTCTTACTGGGGCCTTCACTGTGAGACCACGTACACCA
AGGATGGGTTTTGGACATACATAACTCAGATCGCCACATGCTCCCCGTGGATGTTCTGGATGTTTCTCAA
CAGTGTGTTTCACTTCCTGTGGGTGGCCGTGCTGCTCATGTGTCAGCTGTACCAGATAACATGTTTAGGT
ATTACTACAAATGAAAGAATGAACGCCAGGAGATACAAGCACTTTAAAGTTACGACAACATCTATTGAAA
GCCCATTCAACCATGGATGTGTAAGGAATATTATAGACTTCTTTGAATTTCGATGCTGTGGCCTCTTTCG
TCCTGTTATCGTGGACTGGACCAGGCAGTACACTATAGAATATGACCAAATATCAGGATCTGGGTACCAG
CTTGTGTAG

Translation (632 aa):
MQREEGFNTKMADGPDEYETETGCVPLLHPEEIKPQSHYNHGYGEPLGRKTHIDDYSTWDIVKATQYGIY
ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV
VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL
LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVDAQNVKGESALDLAKQRKNVWMINHLQEA
RQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGLMYGGVWATVQFLSKSFF
DHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQK
KKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLL
FMICWMIYGCVSYWGLHCETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFLWVAVLLMCQLYQITCLG
ITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSGYQ
LV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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