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Report for CCDS56676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56676.1 Public Mus musculus 10 Armt1 23 108 98 CCDS HistoryNCBI Gene:73419Re-query CCDS DB by CCDS ID:56676.1Re-query CCDS DB by GeneID:73419See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095893.10 ENSMUSP00000093581.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095893.10Link to Ensembl Protein Viewer:ENSMUSP00000093581.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095893Re-query CCDS DB by Protein ID:ENSMUSP00000093581
Original member Current member NCBI NM_024261.2 NP_077223.2 Accepted alive Link to Nucleotide Sequence:NM_024261.2Link to Protein Sequence:NP_077223.2Re-query CCDS DB by Nucleotide ID:NM_024261Re-query CCDS DB by Protein ID:NP_077223Link to BLAST:NP_077223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077223.2 439 A6H630-1 439 100% 0 0

Chromosomal Locations for CCDS 56676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 4432671 4432711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4434828 4434933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4439492 4439736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4450647 4450809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4453472 4454236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGCCGAGTCCCCGGCGTTTCTTTCCGCTAAGGACGAGGGGTCCTTTGCATATCTTACGATTAAGGACA
GAACACCGCAGATCTTAACCAAGGTTATTGATACATTGCATCGACATAAAAGTGAATTTTTTGAAAAACA
TGGAGAGGAAGGCATTGAAGCTGAAAAGAAAGCCATCTCTCTTCTTTCTAAATTACGGAATGAACTGCAG
ACAGACAAACCAATCACCCCCTTGGTGGACAAGTGTGTTGACACCCACATATGGAATCAATACCTGGAGT
ATCAGCGGAGCCTTTTAAATGAAGGCGATGGGGAGCCACGCTGGTTCTTCTCACCCTGGTTGTTTGTAGA
GTGCTACATGTATCGGAGAATTCATGAAGCCATCATGCAGAGTCCGCCAATCCATGACTTCGACGTGTTT
AAGGAAAGCAAAGAGGAGAACTTCTTCGAGTCGCAGGGCTCCATCGATGCTCTGTGTTCACACCTGCTGC
AGCTGAAGCCCGTCAAAGGCCTCAGGGAAGAGCAGATCCAGGATGAGTTCTTTAAACTCCTGCAGATTTC
CCTCTGGGGGAATAAGTGTGATCTGTCTCTCTCAGGTGGAGAAAGTAGTTCTCAGAAGGCCAATATAATA
AATTGTTTGCAAGACCTAAAGCCATTCATTTTGATAAATGACACAGAATCTCTCTGGGCATTGCTCAGTA
AGTTAAAGAAAACAGTAGAAACGCCCGTAGTTAGAGTAGACATTGTTCTGGATAATTCTGGCTTTGAACT
GATTACGGATTTAGTATTGGCGGACTTTTTATTTTCCTCGGAGTTAGCTACTGAGATTCATTTCCATGGG
AAAAGCATCCCATGGTTTGTGTCTGACGTTACTGAGCATGACTTTAATTGGATAGTTGAGCACATGAAGA
GCAGCAATCTGGAGTCCATGTCCACCTGTGGGGCCTGCTGGGAGGCCTATGCTAGGATGGGGAGGTGGGC
TTACCACGACCATGCATTTTGGACTCTGCCTCATCCATATTGTGTGATGCCCCAGGTCGCCCCTGACTTA
TACGCTGAACTGCAAAAGGCACATCTTATTTTATTCAAGGGAGATTTGAATTATAGGAAGCTGATGGGTG
ACAGAAAATGGAAGTTCACCTTTCCGTTCCATCAGGCTCTGAGTGGCTTCCACCCTGCACCTCTCTGTAG
CATAAGGACATTAAAGTGCGAGCTTCAGGTTGGTCTGCAGCCTGGGCAGGCGGAGCAGCTCACGGCCTCT
GATCCCCACTGGCTGACCACTGGCAGGTATGGAATATTGCAGTTTGATGGGCCACTTTGA

Translation (439 aa):
MAESPAFLSAKDEGSFAYLTIKDRTPQILTKVIDTLHRHKSEFFEKHGEEGIEAEKKAISLLSKLRNELQ
TDKPITPLVDKCVDTHIWNQYLEYQRSLLNEGDGEPRWFFSPWLFVECYMYRRIHEAIMQSPPIHDFDVF
KESKEENFFESQGSIDALCSHLLQLKPVKGLREEQIQDEFFKLLQISLWGNKCDLSLSGGESSSQKANII
NCLQDLKPFILINDTESLWALLSKLKKTVETPVVRVDIVLDNSGFELITDLVLADFLFSSELATEIHFHG
KSIPWFVSDVTEHDFNWIVEHMKSSNLESMSTCGACWEAYARMGRWAYHDHAFWTLPHPYCVMPQVAPDL
YAELQKAHLILFKGDLNYRKLMGDRKWKFTFPFHQALSGFHPAPLCSIRTLKCELQVGLQPGQAEQLTAS
DPHWLTTGRYGILQFDGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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