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Report for CCDS51944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51944.1 Public Mus musculus 6 Ptpro 21 106 86 CCDS HistoryNCBI Gene:19277Re-query CCDS DB by CCDS ID:51944.1Re-query CCDS DB by GeneID:19277See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000167002 ENSMUSP00000131764 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167002Link to Ensembl Protein Viewer:ENSMUSP00000131764Re-query CCDS DB by Nucleotide ID:ENSMUST00000167002Re-query CCDS DB by Protein ID:ENSMUSP00000131764
Original member Current member EBI,WTSI OTTMUST00000141642 OTTMUSP00000073986 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000141642Link to Vega Protein Viewer:OTTMUSP00000073986Re-query CCDS DB by Nucleotide ID:OTTMUST00000141642Re-query CCDS DB by Protein ID:OTTMUSP00000073986
Original member Current member NCBI NM_001164402.1 NP_001157874.1 Accepted alive Link to Nucleotide Sequence:NM_001164402.1Link to Protein Sequence:NP_001157874.1Re-query CCDS DB by Nucleotide ID:NM_001164402Re-query CCDS DB by Protein ID:NP_001157874Link to BLAST:NP_001157874.1

Chromosomal Locations for CCDS 51944.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137414347 137414350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137416803 137416923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137418209 137418277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137420324 137420407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137426765 137426800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137430672 137430753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137441053 137441143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137442645 137442721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137443518 137443652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137443895 137444017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137449871 137450025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137454585 137454720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137461653 137461757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGTTACAGAGGTGAACCCTAACGTGGTGGTGATCTCGGTGCTGGCCATCCTCAGCACACTTTTAATTG
GA
CTGCTCTTAGTGACCCTTGTCATTCTCCGAAAGAAGCACCTGCAGATGGCTAGGGAATGTGGAGCTGG
C
ACGTTTGTTAACTTTGCATCCTTAGAAAGGGAAGGGAAACTCCCCTACAGTTGGCGTAGGAGTGTGTTT
GCT
CTCTTAACCCTGCTGCCTTCATGTCTTTGGACTGACTATCTTTTGGCATTTTATATTAACCCTTGGA
GT
AAAAATGGCTTAAAGAAGAGGAAACTAACAAACCCCGTTCAGCTGGATGACTTCGATTCTTACATCAA
G
GATATGGCCAAGGACTCGGACTATAAATTCTCTCTTCAGTTTGAGGAGTTGAAGTTGATTGGACTGGAT
ATT
CCGCACTTTGCTGCAGATCTACCGCTGAACCGATGTAAAAACCGCTACACAAACATCCTGCCGTATG
AC
TTTAGCCGGGTGAGGCTAGTCTCCATGAACGAAGAGGAAGGAGCAGACTACATTAATGCCAACTATAT
T
CCTGGATACAACTCACCCCAGGAGTACATTGCCACCCAGGGTCCCCTGCCAGAAACCAGAAATGACTTC
TGG
AAGATGGTCCTACAACAGAAGTCCCACATCATCGTCATGCTCACTCAATGCAATGAGAAAAGGAGGG
TA
AAATGTGACCACTACTGGCCATTCACAGAAGAACCCATTGCTTATGGGGACATCACCGTGGAGATGGT
C
TCTGAGGAAGAGGAGGAGGACTGGGCCAGTAGACACTTCCGGATCAACTATGCGGACGAAGCGCAGGAC
GTG
ATGCATTTTAACTACACAGCCTGGCCCGATCACGGCGTGCCTCCAGCAAACGCCGCCGAGAGCATCC
TG
CAGTTTGTGTTCACAGTGCGACAGCAAGCCGCCAAGAGCAAAGGGCCCATGATCATCCACTGCAGTGC
G
GGTGTGGGACGGACAGGAACCTTCATTGCCCTGGACAGGCTCCTGCAACACATTCGAGATCATGAATTT
GTG
GACATCTTAGGGCTGGTATCAGAGATGCGCTCATACCGAATGTCAATGGTACAGACAGAGGAGCAGT
AC
ATTTTTATCCATCAGTGTGTGCAGCTGATGTGGCTGAGGAAGAAGCAACAGTTCTGCATCAGCGACGT
C
ATCTACGAGAACGTCAGCAAATCCTAG


Translation (405 aa):
MVTEVNPNVVVISVLAILSTLLIGLLLVTLVILRKKHLQMARECGAGTFVNFASLEREGKLPYSWRRSVF
A
LLTLLPSCLWTDYLLAFYINP
WSKNGLKKRKLTNPVQLDDFDSYIKDMAKDSDYKFSLQFEELKLIGLD
I
PHFAADLPLNRCKNRYTNILP
YDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDF
W
KMVLQQKSHIIVMLTQCNEKRR
VKCDHYWPFTEEPIAYGDITVEMVSEEEEEDWASRHFRINYADEAQD
V
MHFNYTAWPDHGVPPANAAESILQFVFTVRQQAAKSKGPMIIHC
SAGVGRTGTFIALDRLLQHIRDHEF
V
DILGLVSEMRSYRMSMVQTE
EQYIFIHQCVQLMWLRKKQQFCISDVIYENVSKS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser