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Report for CCDS51943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51943.1 Public Mus musculus 6 Ptpro 21 106 86 CCDS HistoryNCBI Gene:19277Re-query CCDS DB by CCDS ID:51943.1Re-query CCDS DB by GeneID:19277See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000167679 ENSMUSP00000127112 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167679Link to Ensembl Protein Viewer:ENSMUSP00000127112Re-query CCDS DB by Nucleotide ID:ENSMUST00000167679Re-query CCDS DB by Protein ID:ENSMUSP00000127112
Original member Current member EBI,WTSI OTTMUST00000141494 OTTMUSP00000073941 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000141494Link to Vega Protein Viewer:OTTMUSP00000073941Re-query CCDS DB by Nucleotide ID:OTTMUST00000141494Re-query CCDS DB by Protein ID:OTTMUSP00000073941
Original member Current member NCBI NM_001164401.1 NP_001157873.1 Accepted alive Link to Nucleotide Sequence:NM_001164401.1Link to Protein Sequence:NP_001157873.1Re-query CCDS DB by Nucleotide ID:NM_001164401Re-query CCDS DB by Protein ID:NP_001157873Link to BLAST:NP_001157873.1

Chromosomal Locations for CCDS 51943.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137252686 137252760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137368073 137368346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137376977 137377135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137378005 137378157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137380174 137380647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137382569 137382730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137386167 137386363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137392686 137392806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137393518 137393711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137394796 137394907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137399445 137399596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137400627 137400747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137410974 137411113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137414218 137414350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137416803 137416923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137418209 137418277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137426765 137426800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137430672 137430753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137441053 137441143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137442645 137442721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137443518 137443652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137443895 137444017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137449871 137450025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137454585 137454720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 137461653 137461757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3597 nt):
ATGGGGCACCTGCCTAGGGGAACGCTCGGGGGCCGCCGCCTGCTACCTCTGCTCGGGCTCTTTGTGCTGC
TC
AAGATTGTTACGACGTTCCACGTGGCTGTGCAAGATGACAACAATATCGTTGTGTCTTTAGAAGCTTC
T
GATATAGTCAGCCCAGCATCTGTGTATGTTGTGAGGGTAGCTGGCGAATCAAAAAACTATTTCTTCGAA
TTT
GAGGAATTTAACAGCACATTGCCTCCTCCTGTGGTCTTTAAGGCCACATATCACGGTCTTTATTACA
TA
ATCACTCTGGTGGTAGTCAACGGGAATGTGGTCACCAAACCATCCAGATCAATCACCGTGTTGACAAA
A
CCCTTGCCTGTAACCAGTGTGTCTATCTATGACTATAAACCTTCTCCTGAGACAGGAGTCCTGTTTGAA
ATC
CATTATCCGGAAAAATACAATGTGTTCAGCAGAGTGAACATCAGCTACTGGGAAGGGAGGGACTTCA
GG
ACGATGCTGTACAAAGATTTCTTTAAGGGGAAAACGGTGTTTAATCACTGGCTACCAGGACTATGTTA
C
AGTAACATCACTTTCCAGCTGGTATCGGAGGCAACTTTTAATAAAAGTACCCTTGTGGAGTACAGTGGT
GTG
AGCCATGAACCCAAACAGCACAGAACAGCACCATATCCACCTCGAAACATCTCTGTTCGCTTTGTCA
AC
TTGAACAAGAACAACTGGGAGGAGCCGAGCGGGAGCTTCCCCGAGGACTCGTTCATCAAACCACCGCA
A
GATTCAATAGGAAGAGACAGACGCTTCCATTTCCCCGAAGAAACTCCGGAGACTCCCCCCAGCAATGTG
TCC
TCCGGTTCTCCCCCCAGCAATGTGTCCTCCGCTTGGCCTGACCCGAATAGCACAGACTATGAAAGCA
CA
TCACAGCCCTTCTGGTGGGACAGTGCATCCGCGGCCCCTGAAAACGAGGAGGACTTTGTCAGTGCGCT
G
CCAGCAGACTATGACACTGAGACCACACTCGATAGGACAGAGAAGCCCACAGCCGACCCTTTCTCTGCC
TTC
CCTGTGCAGATGACTCTGAGCTGGTTACCACCCAAACCGCCCACAGCCTTTGATGGCTTCAATATCC
TC
ATAGAGAGGGAAGAGAACTTTACTGACTATTTGACAGTGGATGAAGAAGCCCATGAATTCGTTGCAGA
A
CTGAAGGAGCCTGGGAAATACAAACTCTCAGTGACAACCTTTAGCTCCTCGGGGGCCTGTGAGACTCGG
AAA
AGCCAGTCAGCAAAATCGCTCAGCTTCTACATCAGCCCCACAGGCGAGTGGATTGAAGAACTGACCG
AG
AAACCTCAGCATGTGAGTGTCCACGTCTTAAGCTCAACCACCGCCTTGATGTCGTGGACATCTTCTCA
G
GAGAACTACAACAGCACCATTGTGTCTGTGGTGTCCTTGACCTGCCAGAAACAGAAGGAGAGCCAGCGG
CTG
GAGAAGCAGTATTGTACCCAGGTGAACTCAAGCAAACCTGTAATTGAGAACCTGGTTCCTGGTGCCC
AG
TACCAGGTTGTGATGTACTTAAGAAAAGGCCCTTTGATTGGGCCACCTTCCGATCCTGTGACATTTGC
G
ATTGTTCCCACTGGGATCAAAGATTTAATGCTCTACCCCTTGGGTCCCACTGCTGTCGTGCTGAGCTGG
ACC
CGACCTATCCTGGGAGTCTTCAGAAAATACGTGGTTGAAATGTTCTACTTCAACCCCACCACCATGA
CC
TCAGAGTGGACGACCTACTATGAGATAGCAGCCACAGTTTCCTTAACGGCATCCGTGAGAATAGCAAG
C
CTATTGCCAGCGTGGTACTACAACTTCCGCGTAACCATGGTGACATGGGGAGATCCAGAGCTGAGCTGT
TGT
GACAGTTCCACCATCAGCTTCATAACAGCCCCCGTTGCTCCAGAAATCACGTCTGTGGAGTACTTCA
AC
AGCCTGCTGTACATCAGTTGGACCTATGGGGATGCCACCACTGACCTGTCCCACTCTAGAATGCTGCA
C
TGGATGGTCGTTGCAGAAGGGAGGAAGAAAATTAAAAAGAGTGTGACACGCAATGTCATGACGGCCATC
CTT
AGCCTGCCTCCAGGAGATATCTACAATCTGTCTGTCACGGCCTGCACTGAGAGAGGGAGCAACACCT
CC
TTGCCCCGCCTTGTCAAGCTCGAACCAGCCCCTCCGAAGTCACTCTTCGCAGTGAACAAAACACAGAC
G
TCAGTGACCCTGCTGTGGGTTGAGGAGGGTGTTGCTGATTTCTTTGAAGTCTTCTGTCAGCAGCTCGGC
TCT
GGCCACAATGGCAAACTCCAGGAGCCAGTAGCTGTGTCGTCCCACGTGGTGACCATCTCCAGCCTCC
TC
CCAGCCACTGCCTACAACTGCAGTGTCACCAGCTTCAGCCACGACACTCCCAGTGTCCCTACATTCAT
A
GCTGTCTCCACAATGGTTACAGAGGTGAACCCTAACGTGGTGGTGATCTCGGTGCTGGCCATCCTCAGC
ACA
CTTTTAATTGGACTGCTCTTAGTGACCCTTGTCATTCTCCGAAAGAAGCACCTGCAGATGGCTAGGG
AA
TGTGGAGCTGGCACGTTTGTTAACTTTGCATCCTTAGAAAGGGAAGGGAAACTCCCCTACAGTTGGAG
T
AAAAATGGCTTAAAGAAGAGGAAACTAACAAACCCCGTTCAGCTGGATGACTTCGATTCTTACATCAAG
GAT
ATGGCCAAGGACTCGGACTATAAATTCTCTCTTCAGTTTGAGGAGTTGAAGTTGATTGGACTGGATA
TT
CCGCACTTTGCTGCAGATCTACCGCTGAACCGATGTAAAAACCGCTACACAAACATCCTGCCGTATGA
C
TTTAGCCGGGTGAGGCTAGTCTCCATGAACGAAGAGGAAGGAGCAGACTACATTAATGCCAACTATATT
CCT
GGATACAACTCACCCCAGGAGTACATTGCCACCCAGGGTCCCCTGCCAGAAACCAGAAATGACTTCT
GG
AAGATGGTCCTACAACAGAAGTCCCACATCATCGTCATGCTCACTCAATGCAATGAGAAAAGGAGGGT
A
AAATGTGACCACTACTGGCCATTCACAGAAGAACCCATTGCTTATGGGGACATCACCGTGGAGATGGTC
TCT
GAGGAAGAGGAGGAGGACTGGGCCAGTAGACACTTCCGGATCAACTATGCGGACGAAGCGCAGGACG
TG
ATGCATTTTAACTACACAGCCTGGCCCGATCACGGCGTGCCTCCAGCAAACGCCGCCGAGAGCATCCT
G
CAGTTTGTGTTCACAGTGCGACAGCAAGCCGCCAAGAGCAAAGGGCCCATGATCATCCACTGCAGTGCG
GGT
GTGGGACGGACAGGAACCTTCATTGCCCTGGACAGGCTCCTGCAACACATTCGAGATCATGAATTTG
TG
GACATCTTAGGGCTGGTATCAGAGATGCGCTCATACCGAATGTCAATGGTACAGACAGAGGAGCAGTA
C
ATTTTTATCCATCAGTGTGTGCAGCTGATGTGGCTGAGGAAGAAGCAACAGTTCTGCATCAGCGACGTC
ATC
TACGAGAACGTCAGCAAATCCTAG


Translation (1198 aa):
MGHLPRGTLGGRRLLPLLGLFVLLKIVTTFHVAVQDDNNIVVSLEASDIVSPASVYVVRVAGESKNYFFE
F
EEFNSTLPPPVVFKATYHGLYYIITLVVVNGNVVTKPSRSITVLT
KPLPVTSVSIYDYKPSPETGVLFE
I
HYPEKYNVFSRVNISYWEGRDFRTMLYK
DFFKGKTVFNHWLPGLCYSNITFQLVSEATFNKSTLVEYSG
V
SHEPKQHRT
APYPPRNISVRFVNLNKNNWEEPSGSFPEDSFIKPPQDSIGRDRRFHFPEETPETPPSNV
S
SGSPPSNVSSAWPDPNSTDYESTSQPFWWDSASAAPENEEDFVSALPADYDTETTLDRTEKPTADPFSA
F
PVQMTLSWLPPKPPTAFDGFNILIERE
ENFTDYLTVDEEAHEFVAELKEPGKYKLSVTTFSSSGACETR
K
SQSAKSLSFYI
SPTGEWIEELTEKPQHVSVHVLSSTTALMSWTSSQENYNSTIVSVVSLTCQKQKESQR
L
EKQYCTQ
VNSSKPVIENLVPGAQYQVVMYLRKGPLIGPPSDPVTFAIVPTGIKDLMLYPLGPTAVVLSW
T
RPILGVFRKYVVEMFYFNPTTMTSEWTTYYEIAATVSLTASV
RIASLLPAWYYNFRVTMVTWGDPELSC
C
DSSTISFIT
APVAPEITSVEYFNSLLYISWTYGDATTDLSHSRMLHWMVVAEGRKKIKKSVTRNVMTAI
L
SLPPGDIYNLSVTACTERGSNTSLPRLVKL
EPAPPKSLFAVNKTQTSVTLLWVEEGVADFFEVFCQQLG
S
GHNGKLQ
EPVAVSSHVVTISSLLPATAYNCSVTSFSHDTPSVPTFIAVSTMVTEVNPNVVVISVLAILS
T
LLIGLLLVTLVILRKKHLQMA
RECGAGTFVNFASLEREGKLPYSWSKNGLKKRKLTNPVQLDDFDSYIK
D
MAKDSDYKFSLQFE
ELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYI
P
GYNSPQEYIATQGPLPETRNDFWKMVLQQKSHIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMV
S
EEEEEDWASRHFRINY
ADEAQDVMHFNYTAWPDHGVPPANAAESILQFVFTVRQQAAKSKGPMIIHCSA
G
VGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTE
EQYIFIHQCVQLMWLRKKQQFCISDV
I
YENVSKS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser