NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51364.1 Public Mus musculus 4 Pramel15 23 108 98 CCDS HistoryNCBI Gene:627009Re-query CCDS DB by CCDS ID:51364.1Re-query CCDS DB by GeneID:627009See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 51364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121109.1 ENSMUSP00000112488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121109.1Link to Ensembl Protein Viewer:ENSMUSP00000112488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121109Re-query CCDS DB by Protein ID:ENSMUSP00000112488
Original member Current member NCBI NM_001115077.1 NP_001108549.1 Accepted alive Link to Nucleotide Sequence:NM_001115077.1Link to Protein Sequence:NP_001108549.1Re-query CCDS DB by Nucleotide ID:NM_001115077Re-query CCDS DB by Protein ID:NP_001108549Link to BLAST:NP_001108549.1

Chromosomal Locations for CCDS 51364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 144372760 144373330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144376692 144377261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144377641 144377933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGAGCAGCAAGCCCTTACTCACACTCCAAGAGCTGGCAGCCCAGAACATTCTGAGGAATGAGGCTTTGG
CCATCAGCGCTTTGCAGTACTTACCTGAACTATTCTTACCACAACTGTTGAAGCAAGCCTACGATGGTAA
CCATCTTAAGGTCCTGAGGGCAATAGTATCTTCCTGGCCTTTCCCTCGCCTTCCTCTTGGAGCTCTGAAG
AAGAGAACACCCTACTTGGAGACTCAATTACAAGTTGTCTTAGAGGAGGTTGATAAGCTGCTTATCCAGG
AGGTTCACCCCAGGGAGTACAAACTAGAAGTGCTGGATTTACGGTCTGTGGGACAAAACTATTTGAATGT
GTGGCCTGGGGCCATGGATGACTGGTTACCCAAGACCACTCAAACAGATCCTTGCTGTTCTAAGACAGTA
ATGACACAGCCCTTGAAAGTACTAGTGGACTTGCAGCTCAACAATAGAGGCCAGAGTAGGCTGTTCTCCT
ACCTCGTTCAGTGGAGTGATAGGAGGAAAGGGTTGTTACAGCTGTACTGTAATAAGCTTCAGATCTGGTC
ACCATCCCAACAAAACTACAGGAAGCTCTCACAAAAGGTGAACCTGGACTATGTGGAAACACTGGGCCTG
CATTCCTCCTGCAGTCCATCCTTCTTGCTTAACTTTGCTCCTTACTTGCGCCAAATGAGGAACTTGCGTA
AACTTGCTCTCTCCAACATCCGTGAAGAACACATTATCTCTCCGGAGAAGAGGAGGTGTATCATCACCAG
GTTCACCTTGCAGATCCTTAAGCTGGAGAGCCTCCAGAAGCTGCATCTAGATGCTGTCTGCTTCCTTGAG
GGACACCTAGACCAGCTGCTTGGGTCCGTGAAGACCTCCTTGGATGAACTGGCAGTGACTCACTGTAATC
TCTCAGTATCAGAATGGAGCCATTTTTCTGAGTTCCCATGTGTCAGTCAGTTGCAACAACTGAATTTGGA
AAATGTCAGATTGACTGGTTTAAGTCCTGAACCTCTCCAAGTTCTGTTAGTAAAAGCTGGACCCACCCTG
GTGGCCTTGGACTTGGAGGACTGTCACCTTGAAGATGGCCAGCTCTATGCCATCCTACCTGCCCTGAGCA
AGTGCTTCAAGCTCACCAAGTTCAGTTTCTATGGGAACCAAATCTCTATGCTTGCCATGAAGGACCTACT
ACACCACACTGCCAGCTTGATACATCTAAGGCTGGAGCTATACCCTGTTCCTCAGGACAGTTATGACTAC
CATGGTACTCCCCTCATGCAAAGGATGCAACAACATTGTGATGAGCTTATGAATCTACTGAAAACATTTA
GGAATCCAGGCAGAGTCTTCTTCGGTACTGACCGCTGTGATCAGTGCTGCAATAGATATATCTATAACAA
AACCATTATGTGTAATTGTCGGAGATCTTACTAG

Translation (477 aa):
MSSKPLLTLQELAAQNILRNEALAISALQYLPELFLPQLLKQAYDGNHLKVLRAIVSSWPFPRLPLGALK
KRTPYLETQLQVVLEEVDKLLIQEVHPREYKLEVLDLRSVGQNYLNVWPGAMDDWLPKTTQTDPCCSKTV
MTQPLKVLVDLQLNNRGQSRLFSYLVQWSDRRKGLLQLYCNKLQIWSPSQQNYRKLSQKVNLDYVETLGL
HSSCSPSFLLNFAPYLRQMRNLRKLALSNIREEHIISPEKRRCIITRFTLQILKLESLQKLHLDAVCFLE
GHLDQLLGSVKTSLDELAVTHCNLSVSEWSHFSEFPCVSQLQQLNLENVRLTGLSPEPLQVLLVKAGPTL
VALDLEDCHLEDGQLYAILPALSKCFKLTKFSFYGNQISMLAMKDLLHHTASLIHLRLELYPVPQDSYDY
HGTPLMQRMQQHCDELMNLLKTFRNPGRVFFGTDRCDQCCNRYIYNKTIMCNCRRSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH