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Report for CCDS51145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51145.1 Public Mus musculus 4 Ccl21b 23 108 98 CCDS HistoryNCBI Gene:100042493Re-query CCDS DB by CCDS ID:51145.1Re-query CCDS DB by GeneID:100042493See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178864.2 ENSMUSP00000137149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178864.2Link to Ensembl Protein Viewer:ENSMUSP00000137149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178864Re-query CCDS DB by Protein ID:ENSMUSP00000137149
Original member NCBI NM_011335.2 NP_035465.2 Updated not alive Link to Nucleotide Sequence:NM_011335.2Link to Protein Sequence:NP_035465.2Re-query CCDS DB by Nucleotide ID:NM_011335Re-query CCDS DB by Protein ID:NP_035465
Current member NCBI NM_011335.3 NP_035465.2 Accepted alive Link to Nucleotide Sequence:NM_011335.3Link to Protein Sequence:NP_035465.2Re-query CCDS DB by Nucleotide ID:NM_011335Re-query CCDS DB by Protein ID:NP_035465Link to BLAST:NP_035465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035465.2 133 P86792 133 100% 0 0

Chromosomal Locations for CCDS 51145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42255767 42255833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42255922 42256042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42256137 42256319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42256402 42256432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGCTCAGATGATGACTCTGAGCCTCCTTAGCCTGGTCCTGGCTCTCTGCATCCCCTGGACCCAAGGCA
GT
GATGGAGGGGGACAGGACTGCTGCCTTAAGTACAGCCAGAAGAAAATTCCCTACAGTATTGTCCGAGG
C
TATAGGAAGCAAGAACCAAGTTTAGGCTGTCCCATCCCGGCAATCCTGTTCTTACCCCGGAAGCACTCT
AAG
CCTGAGCTATGTGCAAACCCTGAGGAAGGCTGGGTGCAGAACCTGATGCGCCGCCTGGACCAGCCTC
CA
GCCCCAGGGAAACAAAGCCCCGGCTGCAGGAAGAACCGGGGAACCTCTAAGTCTGGAAAGAAAGGAAA
G
GGCTCCAAGGGCTGCAAGAGAACTGAACAGACACAGCCCTCAAGAGGATAG


Translation (133 aa):
MAQMMTLSLLSLVLALCIPWTQGSDGGGQDCCLKYSQKKIPYSIVRGYRKQEPSLGCPIPAILFLPRKHS
K
PELCANPEEGWVQNLMRRLDQPPAPGKQSPGCRKNRGTSKSGKKGKGSKGCK
RTEQTQPSRG



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser