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Report for CCDS51106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51106.1 Public Mus musculus 3 Depdc1a 23 108 98 CCDS HistoryNCBI Gene:76131Re-query CCDS DB by CCDS ID:51106.1Re-query CCDS DB by GeneID:76131See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106041.2 ENSMUSP00000101656.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106041.2Link to Ensembl Protein Viewer:ENSMUSP00000101656.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106041Re-query CCDS DB by Protein ID:ENSMUSP00000101656
Original member Current member NCBI NM_001172093.1 NP_001165564.1 Accepted alive Link to Nucleotide Sequence:NM_001172093.1Link to Protein Sequence:NP_001165564.1Re-query CCDS DB by Nucleotide ID:NM_001172093Re-query CCDS DB by Protein ID:NP_001165564Link to BLAST:NP_001165564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165564.1 529 Q8CIG0-2 529 100% 0 0

Chromosomal Locations for CCDS 51106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159495519 159495566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159498364 159498629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159514175 159514331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159515505 159515626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159516014 159516144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159516903 159516950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159520830 159520970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159523777 159523949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159526531 159526707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159527944 159528129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159528999 159529139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGAGCGTCAGGGTGCTCCTCTTGGACCTTACCGGGCCACCAAGCTGTGGAATGAAGTAACCACATCTT
TTCGAGTAGGAATGCCTTTAAGAAAACATAGACAACATTTAAAAAAATATAGCAATTGTTTCACTGCAGT
TGAAGCTATAGATTGGCTTTATGATCTGTTAAGAAGTAATAGTAATTTTGGTCCTGAAGTTACAAGACAA
CAGACTATTCAACTATTGAGAAAATTTCTTAAGAATCATGTGATTGAAGATATCAAAGGTAGATGGGGAT
CGGAAAGCCTTGATGACAACAATCAACTATTCAGATTTCCTGCAACTTCTCCACTTAAAACTTTTCCACA
AAGACATACAGAAATCAAGAAAACCAACACAGAGTACTTTTCCAAAGACAAAGATGGTATTTTTAAATTA
CGAAACTTATCTCAAAAAACTTCTAAGAAGCGTGGATTACATTTCTCTCAGGAAAATACAGAAAAGATAA
ATCATGAAAGAATAACCAATGAAGATCTAGAAATTGCACCTGACAACCAAGAAATAAGCCAGGAAGATGT
TGAAGAAGTTTGGAGATACGTTATTATGATATACCTGCAAACCATTTTAAGTTTGCCATCCATAGAAGAA
CTCTTAAACCCAAACCAAGTAATTCCTCAATATATAATGTACAACATGGCCAACACAAGTAAGCATGGAG
TGGTCATACTACAAGACAAATCAGACGATCTTCCACATTGGGTTTTATCTGCAATGAAGTGCCTAGCAAA
TTGGCCAAGAAGTAATGACACCAATAATCTAACTTATGTTGGATTTGAACGTGATGTATTCAAAACAATT
GCAGATTATTTTCTAAATCTCCCTGAACCTCTACTTACATTTGAATATTATGAATTATTTGTGAACATTT
TGGGTTTGCTGCAACCTCACTTAGAGAGGGTTGCCATCAATGCTCTACAGTTATGTTGTTTGTTACTTCC
CCCACCAAATCGTAGAAAGCTTCAACTCTTAATGCGCATGATTTCTAGAATGAGTCAAAATGTTGATATG
CCCAAACTTCATGAACAAATAGGTACAAGATCATTGATGATAAATACTTTTTCTCGATGTGTACTATGTT
GTGCTGAAGAAGTGGATCTTGATGAGCTTCTGGCTTCAAGATTAGTTTCTTTCCTAATGGATCATCATCA
GGAAATTCTTCAAGTACCCACTTATTTACAAGCTGCAGTGGAGAAACATCTTGACTACATTAAAAAGGGC
AATGTTAAAAATCATGGAGATGGACTAGTTGTTCCTTTGCCAACATATTCTTACTGTAAACAGATTAGTG
CTAAAGAATTTGATGAACAGAAAATTTCAACTTCCCAAGCTGCAATTGCAGAACTTTTGGAGAATATTGT
CAGAAGTAAAAGCTTGTCTCTAAAGGAGAAAAGAAGAAAATTGAAACAGTTTCAGAAGGAATACCCCTTG
ATATATCAGAAAAGATTTCCAACCACTGAGAGTGAAGCAGCACTTTTTGATGATAAACCTACAATCAAGC
AACCGATGCTGAATTTAAGAAACCCCAAGCTTCACAGTCTGCGTTACTGA

Translation (529 aa):
MERQGAPLGPYRATKLWNEVTTSFRVGMPLRKHRQHLKKYSNCFTAVEAIDWLYDLLRSNSNFGPEVTRQ
QTIQLLRKFLKNHVIEDIKGRWGSESLDDNNQLFRFPATSPLKTFPQRHTEIKKTNTEYFSKDKDGIFKL
RNLSQKTSKKRGLHFSQENTEKINHERITNEDLEIAPDNQEISQEDVEEVWRYVIMIYLQTILSLPSIEE
LLNPNQVIPQYIMYNMANTSKHGVVILQDKSDDLPHWVLSAMKCLANWPRSNDTNNLTYVGFERDVFKTI
ADYFLNLPEPLLTFEYYELFVNILGLLQPHLERVAINALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDM
PKLHEQIGTRSLMINTFSRCVLCCAEEVDLDELLASRLVSFLMDHHQEILQVPTYLQAAVEKHLDYIKKG
NVKNHGDGLVVPLPTYSYCKQISAKEFDEQKISTSQAAIAELLENIVRSKSLSLKEKRRKLKQFQKEYPL
IYQKRFPTTESEAALFDDKPTIKQPMLNLRNPKLHSLRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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