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Report for CCDS50680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50680.1 Public Mus musculus 2 Capn3 21 106 86 CCDS HistoryNCBI Gene:12335Re-query CCDS DB by CCDS ID:50680.1Re-query CCDS DB by GeneID:12335See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000028748 ENSMUSP00000028748 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028748Link to Ensembl Protein Viewer:ENSMUSP00000028748Re-query CCDS DB by Nucleotide ID:ENSMUST00000028748Re-query CCDS DB by Protein ID:ENSMUSP00000028748
Original member Current member EBI,WTSI OTTMUST00000036495 OTTMUSP00000016399 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000036495Link to Vega Protein Viewer:OTTMUSP00000016399Re-query CCDS DB by Nucleotide ID:OTTMUST00000036495Re-query CCDS DB by Protein ID:OTTMUSP00000016399
Original member Current member NCBI NM_001109761.2 NP_001103231.1 Accepted alive Link to Nucleotide Sequence:NM_001109761.2Link to Protein Sequence:NP_001103231.1Re-query CCDS DB by Nucleotide ID:NM_001109761Re-query CCDS DB by Protein ID:NP_001103231Link to BLAST:NP_001103231.1

Chromosomal Locations for CCDS 50680.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120476982 120477230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120480683 120480752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120482110 120482228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120484491 120484624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120485181 120485349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120488074 120488157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120489668 120489753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120490954 120491031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120491794 120491954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120494772 120494941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120495236 120495247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120495865 120496073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120496978 120497014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120502103 120502180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120502387 120502444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120502529 120502593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120502976 120503044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120503133 120503211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120503349 120503465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120504096 120504154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 120504473 120504499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGCCCTACCTGCTGCCGGGATTCTTCTGTGACAGGGTGATCCGAGAAAGGGACAGGAGAAATGGAGAGG
GC
ACTGTCTCACAACCTCTCAAGTTTGAGGGGCAGGATTTTGTCGTTCTCAAACAACAGTGTCTGGCTCA
G
AAGTGCCTCTTTGAAGACCGTGTCTTCCCAGCAGGTGTGCAGGCCCTTGGCTCCCATGAGCTGAGCCAG
AAA
GCCAAGATGAAGGCCATCACTTGGAAGAGGCCAAAGGAAATTTGTGAGAATCCCCGGTTTATCATTG
GT
GGAGCCAACAGGACTGACATCTGCCAAGGAGATCTAGGGGACTGCTGGTTTCTTGCAGCCATCGCCTG
C
CTGACCCTGAATGAGCGGCTGCTTTTCCGAGTTATACCCCATGATCAAAGTTTCACTGAAAACTACGCA
GGG
ATCTTCCACTTCCAGTTCTGGCGCTATGGAGACTGGGTAGATGTGGTCATTGACGACTGTCTGCCAA
CA
TACAACAATCAGCTGGTTTTCACCAAATCCAACCACCGCAATGAGTTCTGGAGTGCTCTCCTTGAGAA
G
GCTTATGCCAAGCTCCATGGCTCCTATGAAGCTCTGAAAGGTGGGAATACCACAGAAGCCATGGAGGAC
TTC
ACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGACATGTACAAGATTATGAGGA
AA
GCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGACACAATTGTTCCAGTGCAGTATGAAACAAG
A
ATGGCCTGTGGGTTGGTGAAAGGGCATGCCTATTCAGTCACTGGGCTGGAGGAGGCCCTGTTCAAAGGT
GAG
AAGGTGAAGTTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTGGAGTGATG
G
T
TGGAAGGACTGGAGCTTTGTAGACAAAGATGAGAAGGCCCGTCTACAGCACCAGGTTACTGAGGATGG
A
GAGTTCTGGATGTCATATGATGACTTCGTCTACCATTTCACGAAGCTGGAGATCTGCAACCTCACAGCT
GAC
GCCCTGGAGTCCGATAAGCTTCAGACCTGGACGGTGTCTGTAAACGAGGGCCGCTGGGTGAGGGGCT
GT
TCTGCTGGAGGCTGCCGAAACTTCCCAGACACTTTCTGGACCAACCCGCAGTACCGTCTCAAGCTTCT
G
GAGGAAGACGATGACCCTGAGGACTCTGAGGTAATCTGCAGCTTCCTCGTGGCTCTGATGCAGAAGAAC
CGG
CGCAAGGACCGGAAGCTGGGGGCCAACCTCTTCACTATTGGCTTCGCCATCTACGAGGTTCCCAAAG
AG
ATGCACGGGAATAAGCAACACCTGCAGAAGGACTTCTTCTTGTACAACGCCTCCAAGGCCAGAAGCAA
A
ACCTACATCAACATGCGGGAGGTGTCCCAGCGCTTCCGCCTGCCACCCAGCGAGTATGTCATCGTACCC
TCC
ACCTACGAGCCCCACCAGGAGGGGGAATTCATCCTCCGAGTCTTCTCCGAAAAGAGGAATCTCTCTG
A
G
GAAGCTGAAAATACAATCTCTGTGGATCGGCCAGTGCCAAGGCCTGGCCACACAGACCAGGAAAGTGA
G
GAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGACGACATGGAGATCTGTGCAGATGAA
CTC
AAGAATGTCCTCAACACAGTGGTGAACAAACACAAGGACCTGAAGACACAAGGGTTCACGCTGGAGT
CC
TGCAGAAGCATGATAGCTCTCATGGATACAGATGGCTCTGGAAGACTGAATCTTCAAGAGTTCCATCA
C
CTCTGGAAAAAGATCAAGGCCTGGCAGAAAATCTTCAAGCACTATGACACAGACCATTCCGGTACCATC
AAT
AGCTATGAGATGCGAAATGCAGTCAATGATGCAGGCTTCCATCTCAACAGCCAACTCTATGACATCA
TC
ACCATGCGCTATGCGGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCT
G
GAAGGGATGTTCAGAGCTTTTAACGCATTTGACAAGGATGGCGATGGTATCATCAAACTGAATGTACTT
GAG
TGGCTGCAGCTTACCATGTATGCCTGA


Translation (709 aa):
MPYLLPGFFCDRVIRERDRRNGEGTVSQPLKFEGQDFVVLKQQCLAQKCLFEDRVFPAGVQALGSHELSQ
K
AKMKAITWKRPK
EICENPRFIIGGANRTDICQGDLGDCWFLAAIACLTLNERLLFRVIPHDQSFTENYA
G
IFHFQ
FWRYGDWVDVVIDDCLPTYNNQLVFTKSNHRNEFWSALLEKAYAKLHGSYEALKGGNTTEAMED
F
TGGVTEFFEIKDAPSDMYKIMRKAIERGSLMGCSID
TIVPVQYETRMACGLVKGHAYSVTGLEEALFKG
E
KVKLVRLRNPWGQVEWNGSWSD
GWKDWSFVDKDEKARLQHQVTEDGEFWMSYDDFVYHFTKLEICNLTA
D
ALESDKLQTWTVSVNEGRWVRGCSAGGCRNFP
DTFWTNPQYRLKLLEEDDDPEDSEVICSFLVALMQKN
R
RKDRKLGANLFTIGFAIYE
VPKEMHGNKQHLQKDFFLYNASKARSKTYINMREVSQRFRLPPSEYVIVP
S
TYEPHQEGEFILRVFSEKRNLS
EEAENTISVDRPVPRPGHTDQESEEQQQFRNIFRQIAGDDMEICADE
L
KNVLNTVVNK
HKDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTI
N
SYEMRNAVNDA
GFHLNSQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVL
E
WLQLTMYA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser