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Report for CCDS50451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50451.1 Public Mus musculus 19 Fgf8 23 108 98 CCDS HistoryNCBI Gene:14179Re-query CCDS DB by CCDS ID:50451.1Re-query CCDS DB by GeneID:14179See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111928.7 ENSMUSP00000107559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111928.7Link to Ensembl Protein Viewer:ENSMUSP00000107559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111928Re-query CCDS DB by Protein ID:ENSMUSP00000107559
Original member NCBI NM_001166362.1 NP_001159834.1 Updated not alive Link to Nucleotide Sequence:NM_001166362.1Link to Protein Sequence:NP_001159834.1Re-query CCDS DB by Nucleotide ID:NM_001166362Re-query CCDS DB by Protein ID:NP_001159834
Current member NCBI NM_001166362.2 NP_001159834.1 Accepted alive Link to Nucleotide Sequence:NM_001166362.2Link to Protein Sequence:NP_001159834.1Re-query CCDS DB by Nucleotide ID:NM_001166362Re-query CCDS DB by Protein ID:NP_001159834Link to BLAST:NP_001159834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159834.1 215 P37237-2 215 100% 0 0

Chromosomal Locations for CCDS 50451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45736990 45737280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45738118 45738224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45741499 45741679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45742516 45742552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45742653 45742684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGGCAGCCCCCGCTCCGCGCTGAGCTGCCTGCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAGG
TAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAG
CCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAAC
AAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCGCGAAGCTCATTGTGGAGACCGATACTTTTG
GAAGCAGAGTCCGAGTTCGCGGCGCAGAGACAGGTCTCTACATCTGCATGAACAAGAAGGGGAAGCTAAT
TGCCAAGAGCAACGGCAAAGGCAAGGACTGCGTATTCACAGAGATCGTGCTGGAGAACAACTACACGGCG
CTGCAGAACGCCAAGTACGAGGGCTGGTACATGGCCTTTACCCGCAAGGGCCGGCCCCGCAAGGGCTCCA
AGACGCGCCAGCATCAGCGCGAGGTGCACTTCATGAAGCGCCTGCCGCGGGGCCACCACACCACCGAGCA
GAGCCTGCGCTTCGAGTTCCTCAACTACCCGCCCTTCACGCGCAGCCTGCGCGGCAGCCAGAGGACTTGG
GCCCCGGAGCCCCGATAG

Translation (215 aa):
MGSPRSALSCLLLHLLVLCLQAQVTVQSSPNFTQHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLAN
KRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTA
LQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTW
APEPR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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