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Report for CCDS49790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49790.1 Public Mus musculus 16 Yeats2 23 108 98 CCDS HistoryNCBI Gene:208146Re-query CCDS DB by CCDS ID:49790.1Re-query CCDS DB by GeneID:208146See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115560.3 ENSMUSP00000111222.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115560.3Link to Ensembl Protein Viewer:ENSMUSP00000111222.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115560Re-query CCDS DB by Protein ID:ENSMUSP00000111222
Original member Current member NCBI NM_001145930.1 NP_001139402.1 Accepted alive Link to Nucleotide Sequence:NM_001145930.1Link to Protein Sequence:NP_001139402.1Re-query CCDS DB by Nucleotide ID:NM_001145930Re-query CCDS DB by Protein ID:NP_001139402Link to BLAST:NP_001139402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139402.1 1407 Q3TUF7-1 1407 100% 0 0

Chromosomal Locations for CCDS 49790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20150461 20150560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20152909 20153006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20154137 20154229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20156887 20157132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20159137 20159252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20161976 20162137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20171191 20171302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20174495 20174539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20179501 20179675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20186251 20186490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20189339 20189497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20190386 20190489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20193159 20193266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20193644 20193826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20203655 20203913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20206084 20206245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20207624 20207793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20208419 20208577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20210032 20210208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20211569 20211749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20213267 20213395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20214391 20214492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20218384 20218486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20219618 20219691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20221674 20221753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20222740 20222941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20227713 20227939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20228697 20228771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20229498 20229571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20230765 20230873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4224 nt):
ATGTCTGGAATCAAGCGAACAATCAAAGAAACTGACCCTGATTATGAGGATGTATCTGTGGCCCTTCCAA
ATAAGCGGCATAAAGCGATTGAGAGTTCAGCTCGAGATGCAGCTGTGCAGAAAATTGAGACTATTATTAA
GGAGCAGTTTGCTCTTGAGATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCGACTGATTGAA
GCCAGGAGGATGATGGATAAGCTCCGGGCCTGCATTGTAGCAAACTATTATGCCTCCGCTGGTCTCCTGA
AGGTTTCTGAGGGATTAAAGACATTTGATCCGATGGCTTTTAATCACCCTGCTATCAAGAAATTTTTGGA
ATCACCTTCTAGGTCATCATCTCCTACCAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGT
GACTCTTTATCTCAGCACAATGACTTCCTGTCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAA
GACCCCCAAGCACCGGGGAACAGCGACCGAGCCGAAAGGCAGGAAGGGACACGTCTAGTATCAGTGGCTC
CCACAAACGGGAACTACGGAATGCTGACCTCACAGGAGATGAGACTTCACGACTGTTTGTCAAGAAAACG
ATAGTAGTCGGCAACGTGTCCAAGTACATACCTCCAGATAAGCGGGAAGAAAATGACCAGTCAACCCATA
AGTGGATGGTATATGTCCGAGGGTCGCGTAGAGAGCCCAGCATTAATCACTTTGTCAAGAAAGTTTGGTT
TTTCCTTCATCCTAGCTATAAACCAAACGATCTTGTGGAAGTTAGAGAGCCCCCCTTTCATCTGACTAGA
AGAGGCTGGGGTGAGTTTCCTGTCAGAGTGCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGATAGATA
TCATACACAACCTGAAGCTGGATAGAACCTACACTGGCCTACAGACCCTGGGTGCAGAGACGGTGGTGGA
CGTCGAGCTTCATCGGCACTCGCTTGGTGAAGACTCCGTTTATCCTCAGTCGTCGGAATCAGACGTATGT
GATGCCCCGCCTCCAACCCTGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGC
CGGCAGCTGCTGCCCCTGTGGGGGAAGGATTCCCAGAGACCACTGAAGCTGAGAGACACAGTACATTTTA
TTCTTTACCATCTTCGTTGGAAAGAACACCCACTAAAGTGACAACAGCACAGAAGGTCACCTTCAGTTCA
CATGGGAATTCTGCCTTCCAGCCTATCGCATCAAGCTGCAAAATTGTGCCACAAAGTCAGGTGCCTAATC
CCGAGTCACCTGGCAAGTCCTTTCAGCCAATCACCATGAGCTGTAAGATTGTCTCAGGTTCTCCAATATC
AACTCCAAGCCCATCACCATTACCTCGCACACCAACTTCCACTCCAGTTCATTTGAAGCAAGGCACTGCC
AGTTCTGGTGTCAGCAACCCTCATGTTATTGTGGATAAGCCTGGGCAGGTCATTGGAGCCTCCACTCCAA
GTACAGGAAGTCCTACAAGCAAGCTCCCAGTGGCCTCTCAGGCTTCCCAAGGAACAGGGTCCCCTATTCC
TAAGATTCATGGAAGTAGTTTTTTGACATCTACTGTGAAGCAGGAGGAGTCTTTATTCGCATCTATGCCA
CCTCTTTGCCCAATTGGTAGTCACCCTAAAGTGCAGAGCCCCAAAGCTGTGACTGGAGGACTTGGGGCTT
TCACAAAGGTGATCATCAAACAGGAACCTGGAGAAGCTCCTCATGTGTCCACAACAGGAGCTGCGAGCCA
GTCAGCATTCCCTCAGTATGTGACCGTGAAAGGGGGTCACATGATAGCTGTGTCCCCTCAAAAGCAGGTC
ATAAGTGCTGGAGAAGGGACCACTCAGTCACCAAAGATTGCACCCTCCAAGGTTGTTGGTGTGCCTGTTG
GCTCTGCCTTACCTTCCACAGTGAAGCAGGCTGTAGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGGC
CAGCTCTTCTGTCACCAAAGCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGCAATCGTG
AGTGGAGGTGGAGGGACCATTGTCGCTCAGCCAGTGCAGACCTTAACCAAGACTCAGGTCACAGCTGCTG
GGCCGCAGAAGAGTGGCTCCCAGGGCTCAGTAATGGCCACCTTGCAACTACCAGCCACTAATTTGGCCAA
CCTGGCGAACTTGCCTCCGGGCACTAAACTGTACCTTACCACGAACAGCAAGAACCCCTCAGGAAAAGGG
AAGCTGCTGCTGATTCCTCAAGGAGCCATCCTGCGAGCTACCAACAATGCCAACCTGCAGTCTGGCTCGG
CTGCTGCTGGTGGCAGTGGCAGCAGTGGTGCAGGGGGAGGCAGTGGAGGTGGCGGTGGCAGCGGAGCAGG
AGGAACCCCAAGCACCTCTGGCCCAGGAGGGGGCCCCCAGCACCTGACTTACACATCCTACATCCTCAAG
CAAACCCCCCAGGGTACATTTTTAGTTGGCCAACCATCACCCCAAACACCTGGAAAACAACTGACTACTG
CATCGGTGGTTCAAGGAACACTGGGAGTCAGTTCATCATCTGCACAGGGACAACAGACACTGAAAGTCAT
CTCTGGACAGAAAACCACTTTGTTTACACAGGCAGCCACTGCTGGGCAGGCATCGCTGCTGAAGTTACCA
GACAACACCCTGAAGTCAGTGCCAGCAGCTCCACAGCTCGCCAAGCCTGGGACCACGATGCTTCGAGTGG
CAGGGGGGGTGATCACAGCTGCTCCCTCCCCTGCAGTGGCCTTCTCAGCAAATGGTGCTGTACACCAGTC
TGAAGGATCAACCCCTGTGTCATCCTCTGTTGGTTCTATAATCAAAACTCCTGGTCAGCCACAAGTGTGT
GTAAGCCAGGCCACCATGGCAACCTGCAAGGGCCCCGCTGCTGTTGCCGGCACTGCCGCGTCCCTGGTAT
CTGCACCAAGCTCCATCTCTGGGAAAGCCACAGTGTCAGGGTTGCTAAAAGTTCATTCCGCTCAGTCCAG
TCCCCAGCAGGCTGTCCTGACAATTCCCAGTCAACTCAAGCCACTAAGCATCAATACCTCTGGTGGCGTG
CAGACTGTCTTGATGCCTGTGAATAAAGTGGTTCAGTCGTTTTCTACCAGCAAATTACCTACTACTGTCC
TGCCCATAAGTGTTCCAAATCAAGCTGCCCCCAGCTCTGCTCCAGTAGCAATTGCCAAAGTGAAGACTGA
ACCAGAAACTCCTGGGCCAAACTGCATCTCACAGGAGAACCAGGTAGCAGTGAAAACAGAAGAGAGCTCT
GAGCTAAGCAACTACGTCATTAAGGTAGACCATTTGGAGACCATCCAGCAGCTCCTGACAGCAGTAGTGA
AGAAGATCCCATTAATTACTGCAAAAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTTGGAGCAGTA
TTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGTGGCAAAGAGCAATGACAGTACGAAAAGTGTTA
CAAGAAATCCTGGAGAAGAATCCAAGATTCCACCACTTGACTCCCCTCAAGACCAAGCACATTGCTCACT
GGTGCCGCTGCCACGGTTACACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGA
TGTGCTGACCCAGATTGACAGTGAACCAGAGTGCCTGTCATCCTTCTCCACTGCTGATGACCTCTGCCGG
AAGCTGGAGGATCTGCAGCAGTTCCAGAAAAGGGAGCCTGAGAACGAGGAAGAAGTGGATATCCTCAGCC
TGTCAGAGCCACTGAAGACAAACATTAAAAAGGAGCAGGAAGAAAAGCAGGAAGAAATGAGATTCTACCT
TCCACCAACCCCAGGCTCTGGATTTGTTGGTGACATTACACAGAAGATTGGAATCACCCTGCAGCCTGTG
GCGCTGCACAGGAACATGTATGCCTCAGTGGTAGAGGACATGATCTTAAAGGCCACGGAACAGCTGGTGA
GTGACATCCTGAGACAGGCACTGGCAGTTGGATACCAGACAGCATCTCCCAACAGGATTCCCAAAGAAAT
TACAGTGAGTAATATTCATCAGGCCATTTGCAACATTCCTTTTCTGGATTTTCTTACAAACAAACACATG
GGGAGACTGAATGAGGATCAGTGA

Translation (1407 aa):
MSGIKRTIKETDPDYEDVSVALPNKRHKAIESSARDAAVQKIETIIKEQFALEMKNKEHEIDVIDQRLIE
ARRMMDKLRACIVANYYASAGLLKVSEGLKTFDPMAFNHPAIKKFLESPSRSSSPTNQRSETPSANHSES
DSLSQHNDFLSDKDNNSNVDVEERPPSTGEQRPSRKAGRDTSSISGSHKRELRNADLTGDETSRLFVKKT
IVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTR
RGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDSVYPQSSESDVC
DAPPPTLTLPAAVKASAVAQSPEPAAAAPVGEGFPETTEAERHSTFYSLPSSLERTPTKVTTAQKVTFSS
HGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPTSTPVHLKQGTA
SSGVSNPHVIVDKPGQVIGASTPSTGSPTSKLPVASQASQGTGSPIPKIHGSSFLTSTVKQEESLFASMP
PLCPIGSHPKVQSPKAVTGGLGAFTKVIIKQEPGEAPHVSTTGAASQSAFPQYVTVKGGHMIAVSPQKQV
ISAGEGTTQSPKIAPSKVVGVPVGSALPSTVKQAVAISSGQILVAKASSSVTKAVGPKQVVTQGVAKAIV
SGGGGTIVAQPVQTLTKTQVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKG
KLLLIPQGAILRATNNANLQSGSAAAGGSGSSGAGGGSGGGGGSGAGGTPSTSGPGGGPQHLTYTSYILK
QTPQGTFLVGQPSPQTPGKQLTTASVVQGTLGVSSSSAQGQQTLKVISGQKTTLFTQAATAGQASLLKLP
DNTLKSVPAAPQLAKPGTTMLRVAGGVITAAPSPAVAFSANGAVHQSEGSTPVSSSVGSIIKTPGQPQVC
VSQATMATCKGPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAVLTIPSQLKPLSINTSGGV
QTVLMPVNKVVQSFSTSKLPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEESS
ELSNYVIKVDHLETIQQLLTAVVKKIPLITAKGDDASCFSAKSLEQYYGWNIGKRRAAEWQRAMTVRKVL
QEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRHDGDSIEDVLTQIDSEPECLSSFSTADDLCR
KLEDLQQFQKREPENEEEVDILSLSEPLKTNIKKEQEEKQEEMRFYLPPTPGSGFVGDITQKIGITLQPV
ALHRNMYASVVEDMILKATEQLVSDILRQALAVGYQTASPNRIPKEITVSNIHQAICNIPFLDFLTNKHM
GRLNEDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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