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Report for CCDS49747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49747.1 Public Mus musculus 16 Nlrc3 21 106 86 CCDS HistoryNCBI Gene:268857Re-query CCDS DB by CCDS ID:49747.1Re-query CCDS DB by GeneID:268857See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000177551 ENSMUSP00000137628 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177551Link to Ensembl Protein Viewer:ENSMUSP00000137628Re-query CCDS DB by Nucleotide ID:ENSMUST00000177551Re-query CCDS DB by Protein ID:ENSMUSP00000137628
Original member Current member EBI,WTSI OTTMUST00000111446 OTTMUSP00000062395 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000111446Link to Vega Protein Viewer:OTTMUSP00000062395Re-query CCDS DB by Nucleotide ID:OTTMUST00000111446Re-query CCDS DB by Protein ID:OTTMUSP00000062395
Original member NCBI NM_001081280.1 NP_001074749.1 Updated not alive Link to Nucleotide Sequence:NM_001081280.1Link to Protein Sequence:NP_001074749.1Re-query CCDS DB by Nucleotide ID:NM_001081280Re-query CCDS DB by Protein ID:NP_001074749
Current member NCBI NM_001081280.2 NP_001074749.1 Accepted alive Link to Nucleotide Sequence:NM_001081280.2Link to Protein Sequence:NP_001074749.1Re-query CCDS DB by Nucleotide ID:NM_001081280Re-query CCDS DB by Protein ID:NP_001074749Link to BLAST:NP_001074749.1

Chromosomal Locations for CCDS 49747.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3947449 3947539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3947826 3947909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3948260 3948343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3948904 3948987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3949370 3949453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3952387 3952470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3952863 3952946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3953428 3953511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3953932 3954015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3954556 3954639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3955145 3955228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3957269 3957352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3958930 3959013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3959391 3959474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3962454 3962540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3963553 3965302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3965400 3965639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 3976329 3976377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGCAGGCGGAGCCCTTTAGCACCCTGGAGCAGCCACCATGGCAGGAAGGAGACAACATAGGTTCCCCAG
GG
TCAGTCCTGGCTCTGTATTCACAACTTCTGGCTGCAAACACAGACTCCACGAGGAAGCAAGAGGTGTG
G
ACAGACAGAGAGACATGCCTGGCCTACAGTGTTGGCTCCCCAGCTGAGCAGGTGAAAGCCCTTGTGGAT
CTG
CTGGCTGGGAAGGGCAGTCAGCTGCTACAAGTCCGGGACAAAATGCCAGACTCCCCACTAGGATCCC
AG
AGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATGACCCAGAACT
G
GGCAGCCCCTCACACCGGCTGGCCAGCCTCATGCTGGTCGAGGGCCTGACAGACCTGCAGCTAAAGGAG
CAT
GACTTCACACAGGTGGAGGCCACGCGTGGGGTCTGGCACCCTGCCAGAGTTATCACCCTGGACAGGC
TC
TTCCTGCCTCTGTCCCGGGTATCCATCCCACCTCGAGTCTCTCTCACCATTGGAGTGGCTGGTGTGGG
C
AAGACCACGCTAGTGAGGCATTTTGTTCATTGCTGGGCCAGAGGACAGGTGGGCAAGGGCTTCTCACGG
GTT
CTGCCCTTGACCTTTCGGGATCTCAACACCTATGAGAAACTGTCTGCAGACAGACTCATCCAATCCA
TC
TTCTCAAGCATTGGGGAAGCTAGTCTGGTGGCCACAGCCCCAGACAGAGTCCTCCTGGTCCTGGATGG
C
TTGGATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATC
CAG
GTAGACCACCTGATCACTAACATCATCCGAGGCAACCTCTTTCCAGAAATTTCTGTCTGGATCACCT
CC
CGGCCCAGTGCTGCTGGTCAGATCCCTGGGGGCCTAGTGGACCGGATGACTGAGATTCGGGGCCTTAC
T
GAGGAAGAGATCAAAGTGTGTCTGGAGCAGATGTTTCCTGAGGAGCAGAACCTCTTAGGTCAGGTCCTT
AGT
CAAGTGCAGGCCAACAGGGCTCTGTATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTCACGGGGC
TG
GCTCTGGGTCACTTGTATCGCACCAGGCTGGCCGTCCAAGACATAGAGCTGCCATTGCCTCAGACCCT
G
TGTGAGCTCTACTCTTGGTACTTTAGGATGGCTCTTGGTGGGGAGGGCCAGGATAAGGAAAAGGTAAGT
CCT
AGGATCAAGCAGGTGACCCAGGGAGCTCGCAAAATGGTGGGGACATTGGGCCGCCTGGCCTTCCATG
GG
CTGGTCAAGAAGAAATACGTGTTTTATGAACAAGACATGAAGGCATTTGGAGTGGACCTCGCTCTGTT
G
CAGAACACTCTGTGCAGCTGTCTCCTGCAGCGGGAAGAGACCCTGGCCTCCTCTGTAGCTTACTGCTTC
ATT
CACCTGTCTCTGCAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCCAAGAGGGCCATCTTTG
AC
CTCTTCACCGAGAGTGGCATGTCCTGGCCCAGACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCA
G
CGGGCCACACAAGCTAAGGATGGAAGGCTGGATGTGTTTCTGCGCTTCCTCTCTGGCCTCTTGTCCCCA
AGG
GTCAATACTCTGCTGGCCGGCTCCCTGTTGTCCCAAGGCGAGCATCAGAGCTACCGGGACCAGGTGG
CT
GAGGTCCTACAAGGCTTCCTTCATCCTGACGCTGCAGTCTGTGCACGTGCCATCAATGTCTTGTACTG
C
CTAAGTGAGCTGCGGCACACAGAACTGGCCTGCAGTGTGGAGGAGGCCATGCGGAGTGGGACCTTGGCT
GGG
ATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCTGACATCTGCTCCCCAG
AG
GCTGACTTCTCCCTGTGTCTCAGCCAGCATGTCCTCCAGAGCCTGCTGCCCCAGCTGCTCTATTGTCA
A
AGCCTCAGGCTGGACAACAACCAGTTCCAGGACCCTGTGATGGAGTTGCTGGGCAGCGTGCTGAGTGGG
AAG
GACTGTCGCATTCGAAAGATCAGCCTGGCTGAGAATCAGATTGGTAACAAAGGAGCCAAAGCCCTGG
CC
AGATCCCTCCTGGTTAACAGAAGCCTCATCACACTGGACCTCCGGAGTAACAGCATTGGACCACCGGG
G
GCTAAGGCTTTGGCCGATGCTCTGAAGATAAACCGAACGCTAACTTCTCTAAGCCTCCAAAGCAACGTG
ATC
AAGGATGACGGTGTCATGTGCGTGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCATGCTACAGC
TA
CAGAAGAACTTAATTGGGCTCATAGGAGCCCAGCAGATGGCAGATGCCCTGAAGCAGAACAGGAGCCT
G
AAAGCACTCATGTTTTCCAGTAATACCATTGGCGACAGAGGTGCCATAGCCCTGGCTGAGGCCCTGAAG
GTG
AACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACATGGGAGTGACGGTGCTGA
TG
CGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACCTGCGAGAAAACTCCATCAGCCCAGAGGG
A
GCCCAGGCCCTCACTCAAGCTCTCTGCAGGAACAACACTCTGAAGCACTTGGACCTGACAGCTAATCTC
CTC
CATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCACTCCCTCACACACCTTCACC
TG
CAGTGGAACTTCATCCAAGCTGGTGCGGCCAGGGCCCTGGGACAAGCACTCCAGCTGAACAGAACCCT
G
ACAACCTTAGACTTACAGGAGAATGCCATAGGGGATGAAGGAGCTTCCTCAGTGGCTGGCGCACTGAAG
GTG
AACACAACCCTCATTGCTCTCTACCTACAGGTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACTTG
GG
GAGGCCCTCACTGTGAACAGAACCTTGGAGATTCTTGACTTACGAGGAAACGACGTTGGGGCAGCTGG
A
GCCAAGGCCTTGGCAAATGCTTTAAAGTTAAACTCCAGTCTCCGAAGACTCAATCTCCAGGAGAACTCA
CTG
GGGATGGATGGGGCCATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATC
TC
CAGGGGAATCCCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGGCCATCAAGACAAACGCTCCCAC
A
TGCACTGTGGAAATATAA


Translation (1102 aa):
MQAEPFSTLEQPPWQEGDNIGSPGSVLALYSQLLAANTDSTRKQEVWTDRETCLAYSVGSPAEQVKALVD
L
LAGKGSQLLQVRDKMPDSPLGSQSN
ESRIPKHSEALLSRVGNDPELGSPSHRLASLMLVEGLTDLQLKE
H
DFTQVEATRGVWHPARVITLDRLFLPLSRVSIPPRVSLTIGVAGVGKTTLVRHFVHCWARGQVGKGFSR
V
LPLTFRDLNTYEKLSADRLIQSIFSSIGEASLVATAPDRVLLVLDGLDECKTPLEFSNTMACSDPKKEI
Q
VDHLITNIIRGNLFPEISVWITSRPSAAGQIPGGLVDRMTEIRGLTEEEIKVCLEQMFPEEQNLLGQVL
S
QVQANRALYLMCTVPAFCRLTGLALGHLYRTRLAVQDIELPLPQTLCELYSWYFRMALGGEGQDKEKVS
P
RIKQVTQGARKMVGTLGRLAFHGLVKKKYVFYEQDMKAFGVDLALLQNTLCSCLLQREETLASSVAYCF
I
HLSLQEFVAATYYYSASKRAIFDLFTESGMSWPRLGFLAHFRCAAQRATQAKDGRLDVFLRFLSGLLSP
R
VNTLLAGSLLSQGEHQSYRDQVAEVLQGFLHPDAAVCARAINVLYCLSELRHTELACSVEEAMRSGTLA
G
MTSPSHRTALAYLLQMSDICSPEADFSLCLSQHVLQSLLPQLLYCQSL
RLDNNQFQDPVMELLGSVLSG
K
DCRIRKI
SLAENQIGNKGAKALARSLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNV
I
KDDGVMCVAEALVSNQTISML
QLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALK
V
NQILENL
DLQSNSISDMGVTVLMRALCSNQTLSSLNLRENSISPEGAQALTQALCRNNTLKHLDLTANL
L
HDRGAQAIAVAVGENHSLTHL
HLQWNFIQAGAARALGQALQLNRTLTTLDLQENAIGDEGASSVAGALK
V
NTTLIAL
YLQVASIGSQGAQALGEALTVNRTLEILDLRGNDVGAAGAKALANALKLNSSLRRLNLQENS
L
GMDGAIFVASALSENHGLHHI
NLQGNPIGESAARMISEAIKTNAPTCTVEI



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser