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Report for CCDS49660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49660.1 Public Mus musculus 15 Apol9a 23 108 98 CCDS HistoryNCBI Gene:223672Re-query CCDS DB by CCDS ID:49660.1Re-query CCDS DB by GeneID:223672See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081776.10 ENSMUSP00000080468.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081776.10Link to Ensembl Protein Viewer:ENSMUSP00000080468.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081776Re-query CCDS DB by Protein ID:ENSMUSP00000080468
Original member Current member EBI ENSMUST00000089452.5 ENSMUSP00000086875.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089452.5Link to Ensembl Protein Viewer:ENSMUSP00000086875.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089452Re-query CCDS DB by Protein ID:ENSMUSP00000086875
Original member Current member NCBI NM_001162883.1 NP_001156355.1 Accepted alive Link to Nucleotide Sequence:NM_001162883.1Link to Protein Sequence:NP_001156355.1Re-query CCDS DB by Nucleotide ID:NM_001162883Re-query CCDS DB by Protein ID:NP_001156355Link to BLAST:NP_001156355.1
Original member NCBI NM_173786.1 NP_776147.1 Updated not alive Link to Nucleotide Sequence:NM_173786.1Link to Protein Sequence:NP_776147.1Re-query CCDS DB by Nucleotide ID:NM_173786Re-query CCDS DB by Protein ID:NP_776147
Current member NCBI NM_173786.2 NP_776147.1 Accepted alive Link to Nucleotide Sequence:NM_173786.2Link to Protein Sequence:NP_776147.1Re-query CCDS DB by Nucleotide ID:NM_173786Re-query CCDS DB by Protein ID:NP_776147Link to BLAST:NP_776147.1

Chromosomal Locations for CCDS 49660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77404233 77405082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77405581 77405663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCAAGCAGTGGATACCTGTATAGCCTGGTGGCTGAAGATGGAGTCTGGCAGGCGTTTGTATCCAAGG
CCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGCTCTGAGGGAACTGACAGCGCTCTTGGCCAT
AGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGGGAGAAGTTTTTGAAAGTCTTTCCTCGCTTG
AAAGCAGAGCTGGTGGAGCATATCAGTCAGCTCCATGCCCTGGCTGACCACGCTGAGAAACTACACAGGG
GCTGCACCATCTCCAACGTGGTGGCTGACTCCTTCAGTGCTGCCTCTGACATCCTGAGCCTCCTTGGTCT
CTTTCTGGCACCTGTGACAGCAGAGGGAAGTCTGGTGCTCTCAGCAACTGGCTTGGGGCTGGGGGTAGCA
GCTACTGTGACTGATGTTGCTACCTCAATCGTGGAGGAAACAAGCAGGGTTTTGGATGAAGTTGAAGCTG
CTCCGACTGGCACTCATGTGCTGGGGGAGGCTGGCACAAGTGTGGATAGGATTGCCAGCAAGGTCCCTCA
GGCTACCAGAGACATCACTAGAGACCTGGAAGCCCTTGAGCAGCACATGAATGCCCTCAGGCTGGTTAGA
GCCAACCCTCGTTTAGAAGAAGATGCCAGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTA
TGCAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCAC
CGCCGCAGGTGCCGCCCTCTGGAGTGATGTGGACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAAGGG
TCTGCGTCAGAGTCGGCTGAAGCACTGAGGAAGCTGGCTCGAGAGCTGGAGGAGAAGCTAGAGGGGCTCA
TGGAATTCTACAAGACGATCTGA

Translation (310 aa):
MASSGYLYSLVAEDGVWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKVFPRL
KAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEGSLVLSATGLGLGVA
ATVTDVATSIVEETSRVLDEVEAAPTGTHVLGEAGTSVDRIASKVPQATRDITRDLEALEQHMNALRLVR
ANPRLEEDARILATTGSISAQRAMQVRASLKGTPLAMSNEARIQRATAAGAALWSDVDSLVKESKHLYEG
SASESAEALRKLARELEEKLEGLMEFYKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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