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Report for CCDS48640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48640.1 Public Mus musculus 10 Plekhj1 23 108 98 CCDS HistoryNCBI Gene:78670Re-query CCDS DB by CCDS ID:48640.1Re-query CCDS DB by GeneID:78670See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036805.6 ENSMUSP00000042334.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036805.6Link to Ensembl Protein Viewer:ENSMUSP00000042334.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036805Re-query CCDS DB by Protein ID:ENSMUSP00000042334
Original member NCBI NM_023900.2 NP_076389.2 Updated not alive Link to Nucleotide Sequence:NM_023900.2Link to Protein Sequence:NP_076389.2Re-query CCDS DB by Nucleotide ID:NM_023900Re-query CCDS DB by Protein ID:NP_076389
Current member NCBI NM_023900.3 NP_076389.2 Accepted alive Link to Nucleotide Sequence:NM_023900.3Link to Protein Sequence:NP_076389.2Re-query CCDS DB by Nucleotide ID:NM_023900Re-query CCDS DB by Protein ID:NP_076389Link to BLAST:NP_076389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076389.2 164 Q9D240 164 100% 0 0

Chromosomal Locations for CCDS 48640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80796412 80796522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80796591 80796654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80796732 80796822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80797773 80797839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80797910 80797977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80798081 80798174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGCGGTACAACGAGAAAGAGTTGCAGGCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCA
TGCGGGGCCCCAAGAAGGGCAGCGTGGCCAAGCGGCGACTGGTGAAGCTGGTGGTCAACTTCCTCTTTTA
CTTCCGCCCGGACGAGGCCGAGCCCCTCGGAGCCCTGTTGCTGGAGCGCTGCAGAGTGGCCCAGGAAGAA
CCGGGCGGCTTCTCCATCAGCTTCGTCGAAGACCTCAGCAGGAAATATCACTTTGAATGCTGTAGCCAAG
AGCAGTGTCAGGACTGGATGGAAGCTCTGCAGCGGGCCAGCTACGAATACATGCGACAGAGCCTCATCTT
CTACAGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCC
AGGTTCCAGCTGAATAGCCTGCCTAAGGATGGGCGGACTACTTGTATTGGCTCCCAGTTAAATGTGTTGG
ACTGA

Translation (164 aa):
MRYNEKELQALSRQPAEMAAELGMRGPKKGSVAKRRLVKLVVNFLFYFRPDEAEPLGALLLERCRVAQEE
PGGFSISFVEDLSRKYHFECCSQEQCQDWMEALQRASYEYMRQSLIFYRNEIRKMTGKDPLEQFGISEEA
RFQLNSLPKDGRTTCIGSQLNVLD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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