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Report for CCDS40369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40369.1 Public Mus musculus 8 Tmem161a 23 108 98 CCDS HistoryNCBI Gene:234371Re-query CCDS DB by CCDS ID:40369.1Re-query CCDS DB by GeneID:234371See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002413.14 ENSMUSP00000002413.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002413.14Link to Ensembl Protein Viewer:ENSMUSP00000002413.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002413Re-query CCDS DB by Protein ID:ENSMUSP00000002413
Original member NCBI NM_145597.4 NP_663572.1 Updated not alive Link to Nucleotide Sequence:NM_145597.4Link to Protein Sequence:NP_663572.1Re-query CCDS DB by Nucleotide ID:NM_145597Re-query CCDS DB by Protein ID:NP_663572
Current member NCBI NM_145597.5 NP_663572.1 Accepted alive Link to Nucleotide Sequence:NM_145597.5Link to Protein Sequence:NP_663572.1Re-query CCDS DB by Nucleotide ID:NM_145597Re-query CCDS DB by Protein ID:NP_663572Link to BLAST:NP_663572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663572.1 480 Q8VCA6-1 480 100% 0 0

Chromosomal Locations for CCDS 40369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70172438 70172440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70174303 70174406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70176845 70176925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70177241 70177338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70177452 70177608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70178867 70179018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180539 70180599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180706 70180849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180936 70181049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181149 70181323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181430 70181526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181883 70182139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCGGTCCTTGGAGTGCAGCTGGTGGTGACTCTGTTCACCGCCACCCTCATGCACAGGCTAGCGCCAC
ACTGTTCCTTCGCACGCTGGCTGCTCTGCAATGGCAGTCTGTTCCGGTACATACACCCGTCAGAGGAGGA
ACTTCGGGCGCTGTCAGGGAAACTGAGGCCCCGGGTCAGGAAGGAGCGGTGGGCAAATGGTCTTCATGAC
GAGAAGCCATTGTCAGTGCCTCGAGATGCCCATTTCCAGCTGCAGACCTGTCCCCTCACTGCTGTGGATG
CCCTAGTCCTGCGCTTCTTTCTGGAATACCAGTGGTTCGTCGACTTCGCAGTGTACTCCGTTGGTGTGTA
CCTCTTCACAGAGGCCTACTATTTTGTGCTGGGCCCAGTCCAGGAGACCAACATCGCTGTGTTCTGGTGC
CTGCTCACTCTGGCCTTCTCTCTGAAGGTGTTCCTCATGGTGACCCGGCTGTACTTCAGTACCAAGGAGG
GCGGTGAGCGCTCCGTATGTCTCTCCTTTGCCTTCCTCTTCCTCCTCTTGGCCATGCTGGTACAGGTGGT
GCGGGAGGAGACCCTGGAGCTGGGCCTGGAGCCGGGCCTAGCCAGCATGACCCAGCACCTGGAGCCTATT
CTGAAGAAGCAGGATTGGGACTGGACACTCCCTGTGATCAAGTTGGCCATCCGCCTTGGGCTGGCGGTGC
TAGGCTCCCTGCTGGGCGCCTTCCTCATTTTCCCTGGCCTGAGGCTGGCCCAGACCCACCAGGACGCGCT
GACCCTGTCTGCGGACCGACCACTGCTACAGCTGCTCCTACACACCAGCTTCCTGTCACCCCTGTGCACC
TTGTGGCTCTGGACAAAGCCTGTCGCCCGGGACTTCCTGTACCAGGCACCCACAAGGAACATGACTTTCT
CTGTACCGTCAGAAGGGGCTTTCGACTCTCTGCGCCTCTGGGTGTTGGTGGCGCTGTGCCTGTTGCGCCT
GGCAGTAACCCGGCCACACCTGCAGGCCTACCTGTGCCTGGCCAAGGCTCGAGTGGAGCAGCTGCGCAAG
GAGGCTGGCCGCATTGAGGCCCGTGAAATCCAGCAGCGGGTGGTCCGGGTCTACTGCTACGTGACTGTGG
TGAGCCTGCAGTACCTGACCCCGCTCATCCTCACTCTGCACTGCACACTGCTGCTCAAGACCCTGGGAGG
CTACTCTTGGGCCCTGAGCTCTACTCCTCCCCCACTGGCCCCATCCCAGCCCTCAGAGGCTTTGATCCCT
GTAGACCCTGCAGGAGATGAGGCCCAGCAGACTGCAGCCCAGGTTGCAGGGATCCTGGGTGGCCTGCTCA
CGCCCCTCTTCCTCAGAGGCATGCTGGCTTACATCATCTGGTGGACAGCTGCCTGCCAGCTGCTCTCCAG
CCTCTTCGGCCTCTATTTCCACCAGCACCTGGCAGCCTCTTAG

Translation (480 aa):
MAVLGVQLVVTLFTATLMHRLAPHCSFARWLLCNGSLFRYIHPSEEELRALSGKLRPRVRKERWANGLHD
EKPLSVPRDAHFQLQTCPLTAVDALVLRFFLEYQWFVDFAVYSVGVYLFTEAYYFVLGPVQETNIAVFWC
LLTLAFSLKVFLMVTRLYFSTKEGGERSVCLSFAFLFLLLAMLVQVVREETLELGLEPGLASMTQHLEPI
LKKQDWDWTLPVIKLAIRLGLAVLGSLLGAFLIFPGLRLAQTHQDALTLSADRPLLQLLLHTSFLSPLCT
LWLWTKPVARDFLYQAPTRNMTFSVPSEGAFDSLRLWVLVALCLLRLAVTRPHLQAYLCLAKARVEQLRK
EAGRIEAREIQQRVVRVYCYVTVVSLQYLTPLILTLHCTLLLKTLGGYSWALSSTPPPLAPSQPSEALIP
VDPAGDEAQQTAAQVAGILGGLLTPLFLRGMLAYIIWWTAACQLLSSLFGLYFHQHLAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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