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Report for CCDS40336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40336.1 Public Mus musculus 8 Stox2 23 108 98 CCDS HistoryNCBI Gene:71069Re-query CCDS DB by CCDS ID:40336.1Re-query CCDS DB by GeneID:71069See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110367.9 ENSMUSP00000105996.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110367.9Link to Ensembl Protein Viewer:ENSMUSP00000105996.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110367Re-query CCDS DB by Protein ID:ENSMUSP00000105996
Original member Current member EBI ENSMUST00000210030.1 ENSMUSP00000147281.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210030.1Link to Ensembl Protein Viewer:ENSMUSP00000147281.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210030Re-query CCDS DB by Protein ID:ENSMUSP00000147281
Original member Current member NCBI NM_175162.4 NP_780371.3 Accepted alive Link to Nucleotide Sequence:NM_175162.4Link to Protein Sequence:NP_780371.3Re-query CCDS DB by Nucleotide ID:NM_175162Re-query CCDS DB by Protein ID:NP_780371Link to BLAST:NP_780371.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780371.3 801 Q499E5-3 801 100% 0 0

Chromosomal Locations for CCDS 40336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47191680 47191686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47191839 47194104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47203121 47203253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGTCCCCCATCAGTCAGTCTCAGTTTATTCCACTCGGGGAAATCCTTTGCTTGGCCATCTCTGCAATGA
ACTCTGCGAGAAAGCCTGTCACCCAGGAGGCGCTGATGGAACACCTGACCACATGTTTCCCAGGTGTTCC
AACCCCAAGCCAAGAAATTCTACGGCATACCCTAAACACACTGGTACGGGAGAGGAAAATCTATCCGACT
CCGGATGGCTATTTCATTGTGACCCCACAGACTTATTTCATTACTCCCTCCCTCATAAGAACTAACAGTA
AGTGGTACCACTTGGACGAGAGGGTACCTGACAGGTCTCAGTGCACCTCGCCACAACCAGGAACCATAAC
GCCCTCTGCCTCAGGCTGCGTCAGGGAAAGGACATTACCCAGAAAGCACTGCGACTCTTGCCACTGCTGC
CGAGAAGACGTGCACAGCATGCATGCCTCCACCCTGCAGAGGAAGTCCGCCAAGGACTGCAAAGACCCTT
ACTGCCCTCCTCCGCTCTGCCAGGTGCCGCCCACTGAAAAAAGCAAAAGCACTATAAATTTCTCCTATAA
GACGGAAACTCTCTCGAAACCTAAAGATGGTGAAAAGCAGTCCAAAAAATTCGGTCTCAAGTTATTCCGG
CTGAGTTTTAAGAAAGACAAGACCAAACAGCTGGCCAATTTCTCTGCCCAGTTTCCTCCCGAGGAGTGGC
CTCTGCGAGACGAGGACACGCCCACGACCATCCCTCGGGAAGTGGAGATGGAGATCATCCGGCGGATCAA
CCCAGACTTGACGGTGGAAAATGTCATGAGGCACACTGCCCTGATGAAGAAACTTGAAGAAGAAAAAGCT
CACCGGAGCAAAGCCGGGTCCTCCGCCCACCACAGTGGAAGGAGTAAAAAGAGCCGGACTCACCGCAAGT
CCCACGGGAAGTCTCGGTCACACAGCAAGACGCGAGTGTCCAAAGGAGATCCTTCGGATGGCTCGCATCT
GGATATCCCCGGTGAGAGGGAGTATGAATTTTGCGACCCTCTAACCAGGGCCCCCAGAGAGGGCTGCTTC
ATCATTGAACACAAAGGGGACAACTTCATCATGCATAGCAACACGAACGTGATCGAGTCCCATTTCCCCA
TGACGCCAGAATGGGATGTGTCTGGCGAACTGGCCAAAAGGAGAACGGAGATGCCCTTTCCCGAACCCTC
CAGGGGAAGCTCCCACTCCAAAGTGCACCGAAGCCACAGCCATACCCAGGACCGGAGATCCAGGAATGAG
AGGTCCAACAAGGCCAAGGAGAGATCCAGGTCTATGGATAACTCCAAAGGTCCCCTGGGCGCTTCTTCAC
TCGGGACTCCGGAAGACCTGGCTGAAGGCTGCAGCCAAGATGACCAAACACCGAGCCAATCATACATTGA
TGACAGTACTTTAAGGCCTGCGCAAACGATTGGTCATCAAAGGGCTCATATTCCTTCTGCCAGCTACAAA
GAGGTATGCATTCCAGAAATAGTTGGTGGCAGCAAGGAACCTTCTAGTGCTTGTAGCCTTCTGGAGCCAG
GCAAAACCCCTGAGAGTATGCCGTCCTATGGGGAACTCAGCCCTTGCCCGGCTAAAACAGCTGTGGATGA
CTATTTTCAGTGCAACACCTCGAGTGAGACCGTACTCACAGCACCGTCCCCTTTAGGGAAGAATAAGGAG
GACCATGACACTTTGACCTTGGTGGAGGGGGTAAAAAAGCTGTCTCCATCTGAGAGGCAGACCCCCCATT
CTTCCAGGGAACCTGTTGGGCACAAGGAGGAGTCACCGAAAGGGCCAGGAGGGGGCCCTGCAGCCTCTGG
TGGTGTGGCAGAGGGGTTAGCCAATGGCCGCCTTGTCCAACATCATAGCGCAGAACCCAGCAGCCTGGAC
AAAAGGAAAGAAATATTCAGCAAAGACACACTGTTCAAACCTCTACACAGCACCCTGTCTGTAAACAGCT
ATCACAAATCTAGCTTGTCCCTCCTCAAGTCTCACCCAAAGTCACCCGTTGACACACTGCCAGGCCGTTG
TGAGAAACTGGAACCTTCCCTTGGGACATCCGCGGCCCAAGCCATGCCTCCATCCCAACGTCAGCAGGAG
CCTGGAGGGAACCAGGAGGCTTCTTTTGACTATTACAACGTCTCTGATGACGACGACTCCGAGGAGGGGG
CCAACAAAAACGCGGAGGAGGAGAAAAACAGAGATGATGTGGGCACCATGCAGTGGCTCCTGGAGAGGGA
GAAGGAAAGAGACTTGCAGAGGAAGTTTGAGAAAAACCTCACCCTCCTCACCCCAAAAGAAACTGATAGC
AGCAGCAACCAGAGAGCCACCCACTCAGCCCGGCTGGACAGCATGGATAGCAGCAGCATCACGGTGGACA
GTGGATTCAACTCCCCACGGAATTGA

Translation (801 aa):
MSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPT
PDGYFIVTPQTYFITPSLIRTNSKWYHLDERVPDRSQCTSPQPGTITPSASGCVRERTLPRKHCDSCHCC
REDVHSMHASTLQRKSAKDCKDPYCPPPLCQVPPTEKSKSTINFSYKTETLSKPKDGEKQSKKFGLKLFR
LSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKA
HRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYEFCDPLTRAPREGCF
IIEHKGDNFIMHSNTNVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNE
RSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTIGHQRAHIPSASYK
EVCIPEIVGGSKEPSSACSLLEPGKTPESMPSYGELSPCPAKTAVDDYFQCNTSSETVLTAPSPLGKNKE
DHDTLTLVEGVKKLSPSERQTPHSSREPVGHKEESPKGPGGGPAASGGVAEGLANGRLVQHHSAEPSSLD
KRKEIFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKSPVDTLPGRCEKLEPSLGTSAAQAMPPSQRQQE
PGGNQEASFDYYNVSDDDDSEEGANKNAEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLTPKETDS
SSNQRATHSARLDSMDSSSITVDSGFNSPRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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