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Report for CCDS40073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40073.1 Public Mus musculus 7 Or52e15 23 108 98 CCDS HistoryNCBI Gene:258755Re-query CCDS DB by CCDS ID:40073.1Re-query CCDS DB by GeneID:258755See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050599.4 ENSMUSP00000054607.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050599.4Link to Ensembl Protein Viewer:ENSMUSP00000054607.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050599Re-query CCDS DB by Protein ID:ENSMUSP00000054607
Original member Current member EBI ENSMUST00000213942.2 ENSMUSP00000149704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213942.2Link to Ensembl Protein Viewer:ENSMUSP00000149704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213942Re-query CCDS DB by Protein ID:ENSMUSP00000149704
Original member Current member NCBI NM_146760.1 NP_666971.1 Accepted alive Link to Nucleotide Sequence:NM_146760.1Link to Protein Sequence:NP_666971.1Re-query CCDS DB by Nucleotide ID:NM_146760Re-query CCDS DB by Protein ID:NP_666971Link to BLAST:NP_666971.1

Chromosomal Locations for CCDS 40073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104995964 104996902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGTCACCAGGCAACAGCTCATGGATTCATCCTTCTTCCTTCCTGCTCTTGGGAATCCCAGGACTGGAAG
AGTTGCAGTTCTGGCTTGGTTTGCCATTTGGAACAGTCTATCTTATTGCTGTCCTAGGGAATGTCATCAT
TCTCTTTGTAATCTATCTAGAGCACAGCCTTCACCAACCTATGTTCTACTTACTGGCCATACTGGCTGTT
ACTGACTTGGGTCTGTCTACAGCAACTGTTCCCAGAGCACTCGGTATATTCTGGTTTGGCTTCCATAAGA
TTGCCTTTAGGGACTGTGTAGCTCAAATGTTTTTCATACATCTGTTTACAGGCATCGAAACATTCATGCT
TGTAGCTATGGCCTTTGATCGCTACATTGCCATCTGTAACCCTCTCCGATATAACACTATCCTCACCAAC
AGAACAATCTGCATTATTGTTGGAGTTGGACTATTTAAAAATTTCATTTTGGTTTTTCCACTTATATTTC
TCATTCTAAGGCTTTCATTCTGTGGACACAATATCATACCACACACATACTGTGAGCACATGGGCATTGC
TCGACTGGCATGTGTCAGCATCAAGGTTAATGTATTATTTGGATTAATACTCATATCTATGATACTTCTG
GATGTTGTTTTGATTGCTCTGTCCTATGCGAAAATTCTTCATGCTGTATTTAAACTCCCATCCTGGGAAG
CCAGACTCAAAGCTCTTAATACCTGTGGTTCCCATGTGTGTGTGATCTTGGCTTTCTTCACTCCAGCCTT
TTTCTCCTTCTTGACTCATCGATTTGGACACAATATTCCACGATATATCCACATCCTCCTTGCTAACTTA
TATGTGATCATTCCCCCTGCTCTTAACCCTCTTATTTATGGGGTGAGAACCAAACAGATTCGAGATCGTG
TGGTGATATTTTTTTGCAAGGAAGTTTGA

Translation (312 aa):
MSPGNSSWIHPSSFLLLGIPGLEELQFWLGLPFGTVYLIAVLGNVIILFVIYLEHSLHQPMFYLLAILAV
TDLGLSTATVPRALGIFWFGFHKIAFRDCVAQMFFIHLFTGIETFMLVAMAFDRYIAICNPLRYNTILTN
RTICIIVGVGLFKNFILVFPLIFLILRLSFCGHNIIPHTYCEHMGIARLACVSIKVNVLFGLILISMILL
DVVLIALSYAKILHAVFKLPSWEARLKALNTCGSHVCVILAFFTPAFFSFLTHRFGHNIPRYIHILLANL
YVIIPPALNPLIYGVRTKQIRDRVVIFFCKEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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