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Report for CCDS39855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39855.1 Public Mus musculus 7 Selenov 23 108 98 CCDS HistoryNCBI Gene:280621Re-query CCDS DB by CCDS ID:39855.1Re-query CCDS DB by GeneID:280621See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 39855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056589.13 ENSMUSP00000050372.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056589.13Link to Ensembl Protein Viewer:ENSMUSP00000050372.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056589Re-query CCDS DB by Protein ID:ENSMUSP00000050372
Original member Current member NCBI NM_175033.4 NP_778198.2 Accepted alive Link to Nucleotide Sequence:NM_175033.4Link to Protein Sequence:NP_778198.2Re-query CCDS DB by Nucleotide ID:NM_175033Re-query CCDS DB by Protein ID:NP_778198Link to BLAST:NP_778198.2

Chromosomal Locations for CCDS 39855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28287965 28288042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28288122 28288196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28288301 28288354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28288471 28288495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28290323 28291077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 255

Nucleotide Sequence (987 nt):
ATGAATAACAAGGCGCGGGTCCCCGCTCCCTCCTCAGTCCGGGCAAACACCCCGGCCCGGACACCCGCTC
CCATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCAT
CCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCCAGCCCCAGTCCCT
GCCCCAACCCTAACCCCAGCCCCAACTCCAGCTCCAGTCCGGCATGCAGCACCGGTGCGGACTCCAGCAC
CAGTCCGGGCCCCGAATCTAGGTCGGGTCTTTCCTAAGATCTCTCCAGGCAGGTTCTTCCCGAGCTTGGC
CTCGCCCACGGCACAGCCCCTTTCTTCCAGGGCTGCTAGCGCTCTCTTGAAGGATCCCACACTCGCTCAA
AATCAGAAACCCTCGATCCACAGCCTAGCGGAGGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGT
CCTCCAAGACACAAGGCTCCATACCGGACACCGCCTCTCCCATAGACTCCTTGGCTTCTACTGCCATGGC
CTCCAGTACATTGGGCCCCATTCCGGGCCCCAACCCTACACTAGAGTTCTTGGCCTCCCCGCTGAAGGAA
ACCCCTGGTCTGGGTAAGCTCTCCACGATTTCCCCAGCACCCAGCTTCGGTTCCACTAAGGAGATCCCAT
CCACCAGCGAGGACGTCCCAACGCCCAACAGAATCTTGATCCGTGTGATGTACTGTGGCCTCTGAAGCTA
TGGCCTTCGGTACATTATACTGAAAAGGACCCTGGAGCATCAATTCCCAAACCTTCTGGAGTTTGAGGAG
GAAAGAGCTACCCAGGTTACAGGGGAGTTTGAAGTGTTTGTGGATGGGAAGCTGATCCATTCCAAGAAGA
AAGGTGATGGCTTTGTGGATGAGTCCGGTCTGAAGAAACTTGTGGGTGCTATTGACGAAGAGATCAAGAA
GAGGTAG

Translation (328 aa):
MNNKARVPAPSSVRANTPARTPAPIRTATPVRAPNPAHNSTPVRTSIRVRAPAQVPNPVPIRFPTPAPVP
APTLTPAPTPAPVRHAAPVRTPAPVRAPNLGRVFPKISPGRFFPSLASPTAQPLSSRAASALLKDPTLAQ
NQKPSIHSLAEAIQGPLPVLTPSSSKTQGSIPDTASPIDSLASTAMASSTLGPIPGPNPTLEFLASPLKE
TPGLGKLSTISPAPSFGSTKEIPSTSEDVPTPNRILIRVMYCGLUSYGLRYIILKRTLEHQFPNLLEFEE
ERATQVTGEFEVFVDGKLIHSKKKGDGFVDESGLKKLVGAIDEEIKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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