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Report for CCDS39404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39404.1 Public Mus musculus 5 Katnal1 23 108 98 CCDS HistoryNCBI Gene:231912Re-query CCDS DB by CCDS ID:39404.1Re-query CCDS DB by GeneID:231912See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047257.14 ENSMUSP00000043210.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047257.14Link to Ensembl Protein Viewer:ENSMUSP00000043210.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047257Re-query CCDS DB by Protein ID:ENSMUSP00000043210
Original member Current member NCBI NM_153572.2 NP_705800.1 Accepted alive Link to Nucleotide Sequence:NM_153572.2Link to Protein Sequence:NP_705800.1Re-query CCDS DB by Nucleotide ID:NM_153572Re-query CCDS DB by Protein ID:NP_705800Link to BLAST:NP_705800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705800.1 488 Q8K0T4 488 100% 0 0

Chromosomal Locations for CCDS 39404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148876138 148876336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148878858 148878984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148888879 148889013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148891629 148891755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148892510 148892668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148893683 148893788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148894149 148894276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148904567 148904729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148918596 148918756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148921237 148921398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGAATTTGGCGGAGATTTGTGAGAATGCGAAGAAAGGCCGGGAATATGCGCTTCTGGGAAATTATGACT
CGTCAATGGTGTATTACCAGGGAGTGATACAGCAGATCCAGAGACACTGCCAGTCACTGAGAGACCCGGC
CACCAAAGCCAAGTGGCAGCAGGTACGGCAGGAACTCTTGGAAGAATATGAACAGGTTAAGAGTATCGTC
AGCACTTTAGAAAGCTTTAAGATGGACAAGCCCCCTGACTTCCCCGTGTCTTGCCGAGATGAACCGTTTA
GAGACCCTGCAGTATGGCCACCCCCTGTCCCTGCGGAACACAGAGCACCCCCTCAAATCAGGCGTCCAAA
TCGCGAAGTGAGGCCTCTGCGGAAAGACGTGGGGGCAGGAGCCCGGGGACTCGTGGGCCGAGCACACCAG
ATATCGAAGAGTGACAAACCTGCAAGTCGGGACAAGGACTATAGAGCAAGAGGGAGAGATGACAAGGCAA
GGAAAAATGTGCAAGATGGTGCAAGTGACAGCGAGATTCCCAAGTTTGATGGCGCCGGGTATGATAAGGA
TCTGGTGGAAGCCCTGGAGAGGGACATTGTGTCCAGGAACCCTAGCATTCACTGGGATGACATAGCAGAC
CTGGAGGAGGCTAAGAAGTTGCTCCGGGAAGCTGTTGTCCTGCCCATGTGGATGCCTGACTTTTTCAAAG
GGATTAGAAGGCCATGGAAGGGTGTGCTGATGGTTGGCCCCCCAGGCACTGGTAAGACTATGCTGGCTAA
AGCGGTTGCCACTGAATGTGGGACAACCTTTTTCAACGTGTCCTCTTCTACCCTGACATCTAAGTACAGA
GGCGAATCTGAGAAGTTGGTCCGACTGTTGTTTGAAATGGCTAGGTTCTATGCCCCTACCACGATCTTCA
TCGACGAAATTGATTCTATCTGCAGTCGAAGAGGGACGTCTGATGAGCACGAGGCAAGCCGCAGAGTCAA
GTCGGAGCTCCTCATCCAGATGGATGGAGTTGGAGGAGCCTTAGAAAATGATGACCCATCCAAAATGGTG
ATGGTCCTGGCTGCTACGAACTTTCCGTGGGACATTGATGAGGCTCTGCGCAGGAGACTAGAGAAAAGGA
TTTACATTCCTCTCCCGACAGCAAAAGGAAGAGCGGAGCTCCTGAAGATCAGCCTCCGGGAGGTAGAGCT
GGACCCCGATGTCCACCTGGAGGACATCGCCGACAAGACGGAGGGCTACTCGGGTGCCGACATCACTAAC
ATCTGCAGGGACGCTTCTTTGATGGCGATGAGGCGGCGCATCAATGGCTTGAGTCCGGAAGAGATCCGGG
CCCTGTCCAAGGAGGAGCTGCAGATGCCTGTCACCAGAGGGGACTTGGAGTTGGCTCTGAAGAAAATCGC
CAAGTCTGTCTCAGCGGCAGACCTGGAGAAGTACGAAAAGTGGATGGTTGAGTTTGGGTCTGCATGA

Translation (488 aa):
MNLAEICENAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSLRDPATKAKWQQVRQELLEEYEQVKSIV
STLESFKMDKPPDFPVSCRDEPFRDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKDVGAGARGLVGRAHQ
ISKSDKPASRDKDYRARGRDDKARKNVQDGASDSEIPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIAD
LEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR
GESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMV
MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITN
ICRDASLMAMRRRINGLSPEEIRALSKEELQMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFGSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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