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Report for CCDS39075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39075.1 Public Mus musculus 5 Crmp1 23 108 98 CCDS HistoryNCBI Gene:12933Re-query CCDS DB by CCDS ID:39075.1Re-query CCDS DB by GeneID:12933See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031004.10 ENSMUSP00000031004.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031004.10Link to Ensembl Protein Viewer:ENSMUSP00000031004.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031004Re-query CCDS DB by Protein ID:ENSMUSP00000031004
Original member Current member NCBI NM_007765.4 NP_031791.3 Accepted alive Link to Nucleotide Sequence:NM_007765.4Link to Protein Sequence:NP_031791.3Re-query CCDS DB by Nucleotide ID:NM_007765Re-query CCDS DB by Protein ID:NP_031791Link to BLAST:NP_031791.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031791.3 572 P97427 572 100% 0 0

Chromosomal Locations for CCDS 39075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 37246058 37246096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37265232 37265320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37268683 37268867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37273347 37273511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37276277 37276338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37278085 37278165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37278863 37278931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37279659 37279779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37280467 37280623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37282852 37282993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37284028 37284198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37286368 37286547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37288805 37288970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37291117 37291208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGTCTCATCAGGGGAAGAAGAGCATCCCGCACATCACCAGTGACCGGCTCCTCATCAGAGGTGGACGCA
TCATCAATGATGACCAGTCCTTCTACGCCGATGTCTACCTAGAAGATGGACTCATAAAACAAATAGGAGA
GAACCTGATTGTTCCTGGTGGAGTGAAGACCATCGAGGCGAATGGCCGAATGGTCATTCCCGGTGGCATT
GATGTCAACACTTACCTGCAGAAGCCCTCCCAGGGCATGACCTCGGCTGATGACTTCTTCCAGGGCACTA
AAGCAGCGCTGGCAGGTGGAACCACGATGATCATTGACCACGTTGTTCCTGAACCTGGGTCCAGCTTGTT
GACTTCCTTTGAGAAATGGCACGAAGCAGCAGACACCAAATCCTGCTGTGACTATTCCCTCCACGTGGAC
ATCACAAGCTGGTATGATGGTGTTCGGGAAGAGCTGGAGGTGCTGGTGCAGGACAAAGGTGTCAACTCCT
TCCAAGTCTACATGGCGTATAAGGACCTGTACCAGATGTCTGACAGCCAGCTGTATGAAGCCTTCACCTT
CCTTAAGGGTTTGGGAGCTGTGATCTTAGTCCATGCAGAAAATGGAGATTTGATAGCTCAGGAACAAAAA
CGGATCCTGGAGATGGGCATCACGGGTCCCGAGGGTCATGCTCTGAGCAGACCCGAGGAGCTGGAGGCCG
AGGCTGTGTTCCGGGCTATTGCCATTGCAGGCCGGATCAATTGCCCTGTGTACATCACCAAGGTCATGAG
CAAGAGTGCAGCGGACATCATCGCACTGGCCAGGAAGAAAGGCCCTCTTGTCTTCGGTGAGCCCATAGCC
GCCAGCCTGGGAACCGATGGCACCCACTACTGGAGCAAGAACTGGGCCAAGGCAGCTGCATTTGTGACTT
CCCCTCCCCTGAGCCCAGACCCCACCACTCCTGACTACTTGACCTCCTTGCTGGCCTGTGGAGACTTGCA
GGTCACAGGTAGTGGCCACTGTCCCTACAGTACTGCTCAGAAGGCTGTGGGCAAGGACAACTTCACTCTG
ATCCCTGAGGGTGTCAATGGTATAGAAGAGCGGATGACCGTTGTCTGGGACAAGGCAGTGGCTACTGGCA
AGATGGATGAGAACCAGTTTGTAGCCGTCACCAGCACCAACGCAGCCAAGATCTTCAACCTGTACCCGAG
GAAAGGTCGGATCGCTGTGGGCTCCGATGCTGACGTAGTCATCTGGGACCCAGATAAGATGAAGACCATA
ACAGCCAAAAGCCATAAATCAACTGTGGAGTACAACATCTTTGAGGGCATGGAGTGCCACGGCTCCCCCC
TGGTGGTCATCAGTCAGGGCAAGATTGTCTTTGAGGATGGAAACATCAGTGTCAGCAAGGGCATGGGCCG
CTTCATCCCTCGGAAGCCATTCCCAGAGCATCTCTACCAGCGTGTCAGGATCAGAAGCAAGGTTTTCGGG
TTGCATAGTGTTTCCAGGGGCATGTACGATGGGCCTGTGTACGAGGTGCCAGCTACACCCAAACATGCTG
CTCCTGCTCCTTCTGCCAAATCCTCGCCTTCTAAACACCAACCCCCACCCATCCGGAACCTCCACCAGTC
CAACTTCAGCTTATCAGGTGCCCAGATAGATGACAACAATCCAAGGCGTACAGGCCACCGCATTGTGGCG
CCCCCTGGTGGCCGCTCCAACATCACCAGCCTCGGTTGA

Translation (572 aa):
MSHQGKKSIPHITSDRLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGI
DVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVD
ITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQK
RILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIA
ASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTL
IPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKMKTI
TAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIPRKPFPEHLYQRVRIRSKVFG
LHSVSRGMYDGPVYEVPATPKHAAPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRRTGHRIVA
PPGGRSNITSLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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