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Report for CCDS38875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38875.1 Public Mus musculus 4 Sf3a3 23 108 98 CCDS HistoryNCBI Gene:75062Re-query CCDS DB by CCDS ID:38875.1Re-query CCDS DB by GeneID:75062See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030734.4 ENSMUSP00000030734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030734.4Link to Ensembl Protein Viewer:ENSMUSP00000030734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030734Re-query CCDS DB by Protein ID:ENSMUSP00000030734
Original member NCBI NM_029157.3 NP_083433.1 Updated not alive Link to Nucleotide Sequence:NM_029157.3Link to Protein Sequence:NP_083433.1Re-query CCDS DB by Nucleotide ID:NM_029157Re-query CCDS DB by Protein ID:NP_083433
Current member NCBI NM_029157.4 NP_083433.1 Accepted alive Link to Nucleotide Sequence:NM_029157.4Link to Protein Sequence:NP_083433.1Re-query CCDS DB by Nucleotide ID:NM_029157Re-query CCDS DB by Protein ID:NP_083433Link to BLAST:NP_083433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083433.1 501 Q9D554 501 100% 0 0

Chromosomal Locations for CCDS 38875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124714895 124714990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124715269 124715316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124715652 124715704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124715810 124715915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124716451 124716523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124718328 124718419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124722024 124722106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124722878 124723016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124723671 124723739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124724759 124724826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124725075 124725182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124726979 124727048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124728074 124728238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124728319 124728429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124729459 124729549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124731371 124731426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124732188 124732265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGACAATTTTAGAGCAGCAACGGCGCTATCATGAGGAGAAGGAACGGCTTATGGATGTTATGGCCA
AAGAGATGCTTACGAAGAAGTCCACGCTTCGGGACCAGATCAATTCCGATCACCGCACTCGGGCCATGCA
AGATAGGTACATGGAGGTCAGTGGGAACCTGAGGGATTTGTATGATGATAAGGACGGACTGCGGAAGGAG
GAGCTCAATGCTATCTCAGGACCCAACGAGTTCGCTGAATTCTATAACAGACTCAAGCAGATAAAGGAAT
TCCATCGGAAGCACCCAAATGAGATCTGTGTGCCAATGTCAGTGGAATTTGAGGAGCTGCTGAAGGCTCG
AGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTCACAGATGAAGAGGGATATGGTCGCTACCTT
GATCTCCATGACTGCTACCTCAAATACATTAACCTGAAGGCATCTGAGAAGCTGGATTACATCACATACC
TGTCCATCTTTGACCAGTTGTTTGACATTCCTAAAGAAAGAAAGAATGCAGAGTACAAAAGATACCTGGA
GATGCTGCTGGAGTACCTACAGGATTACACAGATAGAGTGAAGCCCCTTCAGGATCAGAACGAGCTCTTT
GGGAAGATTCAGACCGACTTTGAGAAGAAGTGGGATAATGGCACCTTTCCTGGATGGCCGAAAGAGACAA
GCAGCGCCCTGACTCACGCGGGAGCCCATCTTGATCTCTCCGCATTCTCCTCCTGGGAGGAGTTGGCATC
CCTGGGTCTGGATAGGTTGAAATCTGCACTATTGGCATTGGGCCTGAAGTGTGGCGGGACCCTAGAAGAA
CGAGCTCAGAGGCTCTTCAGCACCAAAGGAAAGTCTTTGGAGTCACTCGACACTTCTCTGTTTGCCAAAA
ATCCCAAGTCAAAGGGCACAAAAAGAGACACTGAGAGGAACAAAGACATTGCTTTCCTGGAAGCCCAGAT
CTATGAATACGTGGAGATTCTCGGGGAACAGCGACAGCTCACTCATGAAAATGTTCAGCGCAAGCAAGCC
AGGACAGGCGAGGAGCGGGAGGAGGAGGAGGAGGAGCAGATCAGCGAGAGCGAAAGTGAGGACGAAGAGA
ATGAGATCATTTACAACCCCAAGAACCTGCCGCTGGGCTGGGACGGCAAGCCCATCCCCTACTGGCTGTA
CAAGCTCCACGGCCTGAATATCAACTACAACTGTGAGATCTGTGGGAACTACACCTACCGAGGGCCCAAG
GCCTTCCAGCGGCACTTTGCGGAGTGGCGTCATGCTCATGGCATGAGGTGTTTGGGCATCCCAAACACTG
CCCACTTTGCAAATGTGACACAGATTGAAGATGCTGTCTCCTTGTGGGCCAAGCTGAAACTGCAGAAGGC
TTCAGAACGGTGGCAGCCTGACACCGAGGAAGAATATGAAGACTCCAGTGGAAATGTTGTGAACAAGAAG
ACATACGAGGATCTGAAAAGACAAGGGCTGCTCTAG

Translation (501 aa):
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKE
ELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYL
DLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELF
GKIQTDFEKKWDNGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEE
RAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQA
RTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKK
TYEDLKRQGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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