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Report for CCDS38519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38519.1 Public Mus musculus 3 Lce3a 23 108 98 CCDS HistoryNCBI Gene:545548Re-query CCDS DB by CCDS ID:38519.1Re-query CCDS DB by GeneID:545548See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067318.5 ENSMUSP00000066468.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067318.5Link to Ensembl Protein Viewer:ENSMUSP00000066468.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067318Re-query CCDS DB by Protein ID:ENSMUSP00000066468
Original member NCBI NM_001039594.1 NP_001034683.1 Updated not alive Link to Nucleotide Sequence:NM_001039594.1Link to Protein Sequence:NP_001034683.1Re-query CCDS DB by Nucleotide ID:NM_001039594Re-query CCDS DB by Protein ID:NP_001034683
Current member NCBI NM_001039594.2 NP_001034683.1 Accepted alive Link to Nucleotide Sequence:NM_001039594.2Link to Protein Sequence:NP_001034683.1Re-query CCDS DB by Nucleotide ID:NM_001039594Re-query CCDS DB by Protein ID:NP_001034683Link to BLAST:NP_001034683.1

Chromosomal Locations for CCDS 38519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92925495 92925791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGTCCTGCCAGCAGAGTCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTTCCCCAAAGTGCTCCCCAA
AGTGCCCCCCAAAGAGCACAACACAGTGTCTGCCTGCAGCCTCTTCGTGCTGTGCTACAAGCTCTGGGGG
CTGCAGTGTCCCCAGCTCTGAGGGAGGCTGCTGTCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGG
CGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGTGGCCACAGCT
CTGGGGGCTGCTGCTAA

Translation (98 aa):
MSCQQSQKQCQPPPKCPSPKCSPKCPPKSTTQCLPAASSCCATSSGGCSVPSSEGGCCLSHHRRRSHRCR
RRSSSSCDRGSGQQSGGSGCGHSSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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