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Report for CCDS38314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38314.1 Public Mus musculus 2 L3mbtl1 23 108 98 CCDS HistoryNCBI Gene:241764Re-query CCDS DB by CCDS ID:38314.1Re-query CCDS DB by GeneID:241764See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035751.11 ENSMUSP00000044038.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035751.11Link to Ensembl Protein Viewer:ENSMUSP00000044038.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035751Re-query CCDS DB by Protein ID:ENSMUSP00000044038
Original member NCBI NM_001081338.2 NP_001074807.1 Updated not alive Link to Nucleotide Sequence:NM_001081338.2Link to Protein Sequence:NP_001074807.1Re-query CCDS DB by Nucleotide ID:NM_001081338Re-query CCDS DB by Protein ID:NP_001074807
Current member NCBI NM_001081338.3 NP_001074807.1 Accepted alive Link to Nucleotide Sequence:NM_001081338.3Link to Protein Sequence:NP_001074807.1Re-query CCDS DB by Nucleotide ID:NM_001081338Re-query CCDS DB by Protein ID:NP_001074807Link to BLAST:NP_001074807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074807.1 826 A2A5N8 826 100% 0 0

Chromosomal Locations for CCDS 38314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 162947189 162947324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162947680 162947894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162948158 162948272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162948481 162948628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162948770 162948887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162949458 162949539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162959516 162959604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162960081 162960185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162960947 162961082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162961403 162961494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162964427 162964578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162965002 162965078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162965769 162965854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162965998 162966108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162966546 162966660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162966986 162967085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162967252 162967449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162967557 162967606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162970162 162970319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162971166 162971228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162974388 162974522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2481 nt):
ATGGAGGGGCACACTGACATGGAGATACTAAGGACAGTGAAAGGGTCTTCCACAGGGGAGGTCAACGTGC
ACCTGGTGGCCAGAGACAGCGCAGGTCCCCACCCTCAGCTGCCTACAACCGCCTTCATTATTCCTACCAA
TGCAGCTACGCTTGGTCTGCCTAGCACTGCCCTGGATGTGCCCTATCCCCGGGAGCCAGTCCACGTGGGT
GCCCTGGAGCGGGTGGCTGGCAGCGAACCCGTAACAGCTACTATTCTGCCACAGCTAAGCACTGGAACGG
GGACCAATAGCACAGTCAGGCTTCTGGATTGGACTGGCGTTTCTGCACCTTTACCTGGTAGCGGCATGCG
GTTCCGGATAAATGAGTACGCGCCACTGAACATGATAGGAGTGGAGCGACCACGAAGCCCGGAGCAGCGA
CATGAGGGTGGCATGGCCAGGAGAGATGCGGGCATCCAGCACCCTGATGTTCACCAGGACCGTCAAGATA
TAACTTCTCTGGAACCCCCGGTAGATGCGAGTTCCTGCAAGTGCCAGGCTTGTGGGCCTCAACAAAGTAG
TGGCCTAGACGTTGGTTCATCGGGAGACCGATGCTCTCAGCCTTTCCAGAAGCGGTCAGTCATAGTAGAG
AACTCAGGCTGTACCATCGCTTCTGAGCTCCTGAAACCCATGAAAAAGAGGAAACATAAGGAGTATCAGA
GCCCATCAGAGGAGTCAGAGCCGGAGGCTGTGAAGCAAGGAGAAGGAAAAGACGCAGAGCGAGAGCCCAC
CCCTAGCACCCCGGAGAATGAAGAGTGGAGCAGAAGCCAGCTGGTGTCCAGTGAGAAGAAGGACGGCTGG
TCCTGGGAGTCCTACCTGGAGGAGCAGAAGGCCGTCACAGCCCCAGTTAGCCTCTTCCAGGACTCCCAGG
CAGTCACCCATAACAAGAATGGCTTCAAACTGGGCATGAAGCTGGAAGGCATTGACCCCCAACACCCGTC
AATGTACTTCATCCTCACTGTGGCTGAGGTGTGTGGCTACCGCCTGCGCCTGCACTTTGATGGCTACTCT
GAGTGCCACGACTTCTGGGTCAATGCCAACTCCCCTGATATTCATCCCGCTGGCTGGTTTGAGAAGACTG
GACACAAGCTGCAGCTTCCCAAAGGTTACAAGGAAGAGGAGTTCAGCTGGAGCCAGTACCTGCGCAGCAC
GAAAGCTCAGGCAGCCCCCAAGCACCTGTTTGTAAGCCAGAGCCACAGTACTCCACCTGTGGGCTTCCAG
GTGGGCATGAAGCTGGAAGCTGTGGACCGCATGAACCCTTCCCTCGTGTGTGTGGCCAGTGTGACCGATG
TGGTGGACAGTCGCTTCCTGGTGCACTTTGATGACTGGGGCGATACTTACGACTACTGGTGTGATCCCAG
CAGCCCCTACATCCACCCAGTAGGCTGGTGCCAGAAGCAAGGAAAGCCGCTCACCCCTCCACAAGACTAC
CCAGACCCTGACAGCTTCTGCTGGGAGAAATATCTAGAAGAAACTGGGACCTCGGCTGTGCCCAATTGGG
CCTTCAAAGTGCGACCCCCTCACAGCTTCCTGGTGAACATGAAGCTGGAGGCTGTAGACCGCCGGAACCC
AGCACTGATCCGGGTAGCCAGTGTGGAAGATGTGGAGGATCATCGGATAAAGCTCCACTTTGATGGCTGG
AGTCACAATTATGATTTCTGGATTGATGCCGATCACCCAGACATCCACCCTGCAGGCTGGTGCTCCAAGA
CAGGACATCCCCTGGAGCCTCCTCTCCGGCCCAGAGAGTCCAGCTCTGTCTCCCCTGGGGGATGCCCCCC
TCTCAGCCACAGGAGCCCACCCCACACAAAGACCTCCAAATATAACTTTCACCACCGAAAGTGCCCCACT
CCTGGCTGTGACGGCTCCGGCCATGTCACTGGCAAGTTCACAGCTCACCATTGCCTCTCTGGCTGCCCGC
TGGCCGAGAAAAACCAGAGCCGGCTGAAAGCGGAACTGTCCGACTCGGAGACCGCAGCCAGGAAGAAGAA
CCCGTCTAATTTGTCCCCAAGGAAAAAGCCTCGCCATCAAGGCCGGATTGGACGCCCTCCAAAGTATCGC
AAGATTCCAGAAGAAGATCTCCAAGCCCTCCCTCCCAGTGTGGTACACCAGTCCCTCTTCATGTCCACCT
TGCCGACCCACGCTGATCGCCCACTCTCTGTGTGCTGGGAGCAACACTGCAAGCTGTTGCCAGGAGTGGC
GGGCATCTCAGCCTCCACAGTCTCTAAGTGGACCATTGAAGAGGTCTTTGGCTTCGTTCAGACCTTGACG
GGCTCTGAGGACCAAGCGCGCCTCTTCAAAGACGAGATGATTGACGGCGAGGCCTTCCTTTTGCTGACAC
AGGCGGACATTGTGAAGATCATGAGTGTCAAGCTAGGCCCAGCCTTGAAGATCTATAACGCCATTCTCAT
GTTCAAAAACACTGACGATGCCTTTAAGTGA

Translation (826 aa):
MEGHTDMEILRTVKGSSTGEVNVHLVARDSAGPHPQLPTTAFIIPTNAATLGLPSTALDVPYPREPVHVG
ALERVAGSEPVTATILPQLSTGTGTNSTVRLLDWTGVSAPLPGSGMRFRINEYAPLNMIGVERPRSPEQR
HEGGMARRDAGIQHPDVHQDRQDITSLEPPVDASSCKCQACGPQQSSGLDVGSSGDRCSQPFQKRSVIVE
NSGCTIASELLKPMKKRKHKEYQSPSEESEPEAVKQGEGKDAEREPTPSTPENEEWSRSQLVSSEKKDGW
SWESYLEEQKAVTAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYS
ECHDFWVNANSPDIHPAGWFEKTGHKLQLPKGYKEEEFSWSQYLRSTKAQAAPKHLFVSQSHSTPPVGFQ
VGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDDWGDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDY
PDPDSFCWEKYLEETGTSAVPNWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKLHFDGW
SHNYDFWIDADHPDIHPAGWCSKTGHPLEPPLRPRESSSVSPGGCPPLSHRSPPHTKTSKYNFHHRKCPT
PGCDGSGHVTGKFTAHHCLSGCPLAEKNQSRLKAELSDSETAARKKNPSNLSPRKKPRHQGRIGRPPKYR
KIPEEDLQALPPSVVHQSLFMSTLPTHADRPLSVCWEQHCKLLPGVAGISASTVSKWTIEEVFGFVQTLT
GSEDQARLFKDEMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNTDDAFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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