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Report for CCDS37451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37451.1 Public Mus musculus 17 Ermard 23 108 98 CCDS HistoryNCBI Gene:381062Re-query CCDS DB by CCDS ID:37451.1Re-query CCDS DB by GeneID:381062See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097393.10 ENSMUSP00000095005.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097393.10Link to Ensembl Protein Viewer:ENSMUSP00000095005.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097393Re-query CCDS DB by Protein ID:ENSMUSP00000095005
Original member NCBI NM_001039552.3 NP_001034641.2 Updated not alive Link to Nucleotide Sequence:NM_001039552.3Link to Protein Sequence:NP_001034641.2Re-query CCDS DB by Nucleotide ID:NM_001039552Re-query CCDS DB by Protein ID:NP_001034641
Current member NCBI NM_001039552.4 NP_001034641.2 Accepted alive Link to Nucleotide Sequence:NM_001039552.4Link to Protein Sequence:NP_001034641.2Re-query CCDS DB by Nucleotide ID:NM_001039552Re-query CCDS DB by Protein ID:NP_001034641Link to BLAST:NP_001034641.2

Chromosomal Locations for CCDS 37451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15041641 15041646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15042248 15042416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15043005 15043144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15044323 15044424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15045047 15045136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15047565 15047662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15048520 15048656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15049464 15049578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15050271 15050373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15050747 15050776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15051571 15051639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15053214 15053387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15056751 15056834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15058760 15058836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15059344 15059469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15059766 15059984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15061069 15061182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15063602 15063617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAGATTTTACCAGGGGATTCCATGACCACATGCCTTTCTCCTTTAGTGCATGACTTGATTTGTAACC
TTGGGTTTGAACTCAAAGAAATTTGTGATATCAATAGCATTGTAACTCAAAATGGTGAAGTACGATGGAA
AGCAATTACTGACCGTGTGAGATATGAAGAATTAGGGCGAAGTCTGGACTACAGGAGAAGTGTGCAGCAG
CTGGGTCCGGTGTGTGAGGCCATCCACCTACACATCTCAGCTCTGACCAGGGCTCAGTTTGAAATTCAGT
ATTCGCCTTGGTACCAGTGGACAACTTATCCAGAGTTGTTTCTTGAGATACTTGATGCCTTGCAAAGCTC
GCAGCCTGCTGCCGTCTCCCTCGGCGTGATGAAACTAGCTTCCTGTCTGGAGCGAGCCCTCGGCGACGTA
TTTTTACTGGTTGGGAAAGAGTGCCCCTTTCTCCTAAGAGATCTTCTTGCATCTGCAGAGCTTGCACAAG
TCTTTGGACATGCTGTGATGGACATACTAAAAGTCTTCATCGGGTCTCCCTGCGGACTCAACCTGAGAAA
CGTCTTGTGGCATGGCTTTGCTTCCCCTCAAGATATTCCTCCAAAATACTGTTCAGCCATGTTGCTGTTG
ACGGCAGGACTGGGCCAGTTACTGAAGAGTTACCTTCACCACACAAAGGTCACCTTGGCACATCGACCTT
TTGTAACACTCACAAACTTAGAGGATGTGATTGTTTTTCCTGGTGTGACTTATGAGGTACTGTCAGCATT
AGAGACAGTGATGACAAAATCCAACTTCCTATTAAAAATCATGTTGCCATATTGGGAAATGGCAGTGAGC
AAGTTCAAGTCGCACAGGTTTGCCGACTGCACCATGTTGTTGCTGTCACAGCTAGAAGCTGGACTCAGGA
GACTGTTTGCTGCAGTTAACAAGTGTCCTGATAGACTGCTCACAGCCGAGTCAACAATTCTGTATACCAC
GTTTGATGAAATACTGGCAAAACACATGAGTGATGGTAGCATGAACCAGCTTCCTTGTTTCCTTGGAGAG
CCTGCCATGGAATTCTTGTGGGATTTCCTGAACTATCAGGAGGGTCCTCGTATCCGGGATCGTATAAGCC
ATGGGGAGATCAACATACGTGAATTTCCAGAAGAGGCCGCAGGCCAGCTGCTCACATTCTCCCTGGTGCT
GCTGCTCAGATTCACTGAGAAGGGGACAGTGTCAGAACTGAAGGAGGAAGCAGCAATACAGTTGCTGGTT
AGGCTTGCAGAAGGATACAGGTCTCGCTGCCACCCAGCCTTCCAGCTTCAAAAACAGGTGCTGAGCTGTG
AGAGAAGCCTCAGGATGTGGCCTGTGCCGCCTTTGCCAGAAGAGTGTTGTCAGGAAGCAGGCAGATTGGA
AGGAAATTCTGAAGCATGTGCCTGCAACTCTTTAATTAGCAAGATTTGGTGTGAGCTCTGCCACTACCTG
CCTGGGAGTGCCTGTGCTATAAATGGCTTGGATGGTCTTCCCTCAGAGAAGTGGTCCCAGCTGCTCAGTG
AACTGTGTAGCACACGCATTCCTACACTGTTCTGCCCCAGAATCGTTCTAGAAGTTCTAGTTGTGCTCCG
AGGCATCAACTCCCAGTGCCAACGCGTATCTGACCAGGTCACCGCCTCTTTGCAGCTAAGACACAGGCAA
TGGGTGGAGCGTAGGTTACGTTCAAGGCAGCGTCAGAACTATGTGCGCATGCTCAGCAGTGTTAGACTTT
TATGTCCCATGCTTTCCCTGATTTTGTTGCTCCTTGCACTGGAGTTGGCCAGTGTCCATGCTGTTCGTGA
TAAGGGCGCTGAGGAACAACAGCAGTATCTGAGTACACTGAGAACCTAG

Translation (622 aa):
MEILPGDSMTTCLSPLVHDLICNLGFELKEICDINSIVTQNGEVRWKAITDRVRYEELGRSLDYRRSVQQ
LGPVCEAIHLHISALTRAQFEIQYSPWYQWTTYPELFLEILDALQSSQPAAVSLGVMKLASCLERALGDV
FLLVGKECPFLLRDLLASAELAQVFGHAVMDILKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSAMLLL
TAGLGQLLKSYLHHTKVTLAHRPFVTLTNLEDVIVFPGVTYEVLSALETVMTKSNFLLKIMLPYWEMAVS
KFKSHRFADCTMLLLSQLEAGLRRLFAAVNKCPDRLLTAESTILYTTFDEILAKHMSDGSMNQLPCFLGE
PAMEFLWDFLNYQEGPRIRDRISHGEINIREFPEEAAGQLLTFSLVLLLRFTEKGTVSELKEEAAIQLLV
RLAEGYRSRCHPAFQLQKQVLSCERSLRMWPVPPLPEECCQEAGRLEGNSEACACNSLISKIWCELCHYL
PGSACAINGLDGLPSEKWSQLLSELCSTRIPTLFCPRIVLEVLVVLRGINSQCQRVSDQVTASLQLRHRQ
WVERRLRSRQRQNYVRMLSSVRLLCPMLSLILLLLALELASVHAVRDKGAEEQQQYLSTLRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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