NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37416.1 Public Mus musculus 16 Fam3b 23 108 98 CCDS HistoryNCBI Gene:52793Re-query CCDS DB by CCDS ID:37416.1Re-query CCDS DB by GeneID:52793See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049721.8 ENSMUSP00000062006.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049721.8Link to Ensembl Protein Viewer:ENSMUSP00000062006.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049721Re-query CCDS DB by Protein ID:ENSMUSP00000062006
Original member Current member NCBI NM_020622.3 NP_065647.1 Accepted alive Link to Nucleotide Sequence:NM_020622.3Link to Protein Sequence:NP_065647.1Re-query CCDS DB by Nucleotide ID:NM_020622Re-query CCDS DB by Protein ID:NP_065647Link to BLAST:NP_065647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065647.1 235 Q9D309 235 100% 0 0

Chromosomal Locations for CCDS 37416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97471134 97471223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97475248 97475380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97475735 97475822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97476380 97476430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97478349 97478407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97481787 97481910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97500860 97501003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97504823 97504841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCGTCCAGTTGCTACAGGCATCTTCAAGGCACTAGTGTTTATTTTCTCCTCCCTGTGCGCCTGGTATT
CTGGGTACCTGCTCGCGGAGCTCATTCCTGACGTGCCCCTGTCCAGCACTCTCTACAACATCCGAAGCAT
TGGAGAGAGACCTGTTCTCAAAGCCCCAGCCCCCAAAAGACAAAAATGTGACCATTGGTCCCCATGTCCT
CCTGACACCTATGCCTACCGGCTGCTCAGTGGTGGTGGCCGCGACAAGTATGCCAAGATCTGCTTTGAGG
ATGAAGTGCTAATAGGAGAGAAGACGGGGAATGTGGCAAGAGGGATAAACATTGCTGTCGTCAACTATGA
GACAGGAAAAGTGATAGCGACAAAGTACTTTGATATGTATGAAGGTGATAACTCCGGGCCAATGGCCAAG
TTCATTCAGAGCACTCCTTCAAAATCCCTGCTGTTCATGGTGACTCATGATGATGGAAGTTCCAAACTGA
AGGCTCAAGCAAAGGATGCCATAGAAGCCCTTGGAAGCAAAGAAATCAAGAACATGAAGTTCAGATCAAG
CTGGGTGTTTGTTGCAGCAAAGGGCTTTGAGCTCCCTTCAGAAATCGAGAGAGAAAAAATCAACCACTCA
GATCAATCCAGGAACAGATATGCAGGCTGGCCAGCGGAGATCCAGATCGAAGGATGCATACCCAAAGGGC
TGAGATAA

Translation (235 aa):
MRPVATGIFKALVFIFSSLCAWYSGYLLAELIPDVPLSSTLYNIRSIGERPVLKAPAPKRQKCDHWSPCP
PDTYAYRLLSGGGRDKYAKICFEDEVLIGEKTGNVARGINIAVVNYETGKVIATKYFDMYEGDNSGPMAK
FIQSTPSKSLLFMVTHDDGSSKLKAQAKDAIEALGSKEIKNMKFRSSWVFVAAKGFELPSEIEREKINHS
DQSRNRYAGWPAEIQIEGCIPKGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH