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Report for CCDS37299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37299.1 Public Mus musculus 16 Etv5 23 108 98 CCDS HistoryNCBI Gene:104156Re-query CCDS DB by CCDS ID:37299.1Re-query CCDS DB by GeneID:104156See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079601.12 ENSMUSP00000078551.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079601.12Link to Ensembl Protein Viewer:ENSMUSP00000078551.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079601Re-query CCDS DB by Protein ID:ENSMUSP00000078551
Original member Current member NCBI NM_001358428.1 NP_001345357.1 Accepted alive Link to Nucleotide Sequence:NM_001358428.1Link to Protein Sequence:NP_001345357.1Re-query CCDS DB by Nucleotide ID:NM_001358428Re-query CCDS DB by Protein ID:NP_001345357Link to BLAST:NP_001345357.1
Original member Current member NCBI NM_023794.2 NP_076283.2 Accepted alive Link to Nucleotide Sequence:NM_023794.2Link to Protein Sequence:NP_076283.2Re-query CCDS DB by Nucleotide ID:NM_023794Re-query CCDS DB by Protein ID:NP_076283Link to BLAST:NP_076283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345357.1 510 Q9CXC9 510 100% 0 0
NP_076283.2 510 Q9CXC9 510 100% 0 0

Chromosomal Locations for CCDS 37299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22383470 22383691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22386757 22386858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22392655 22392824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22392987 22393055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22399320 22399379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22401672 22401931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22411633 22411920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22412845 22412974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22435877 22435927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22436020 22436067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22436201 22436288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22436438 22436482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGATGGGTTTTGTGATCAGCAAGTCCCTTTTATGGTCCCAGGGAAATCTCGATCAGAGGACTGTCGAG
GGCGACCTTTGATTGACAGAAAGAGGAAGTTTGTGGACACAGATCTGGCTCACGATTCTGAAGAGTTGTT
TCAGGATCTTAGCCAGCTGCAGGAGGCTTGGTTAGCTGAAGCACAAGTTCCTGATGATGAGCAGTTTGTC
CCAGATTTTCAGTCTGATAACTTGGTGCTTCATGCTCCACCTCCCACCAAGATCAAACGGGAGCTGCACA
GCCCCTCCTCCGAGTTGTCGTCCTGTAGCCACGAGCAGGCTCTTGGTGCTAAGTATGGAGAAAAGTGCCT
CTACAACTATTGTGCCTACGATAGGAAGCCTCCCTCTGGGTTCAAGCCATTAACCCCGCCCGCCACTCCT
CTGTCACCCACCCATCAGAATTCCCTATTTCCCCCACCTCAGGCAACTCTGCCCACCTCAGGTCTCACCC
CTGGAGCTGGCCCAGTTCAAGGGGTGGGTCCTGCCCCGACTCCTCACTCACTTCCAGAACCTGGATCACA
GCAACAAACATTTGCGGTCCCCCGGCCACCACATCAGCCCCTGCAAATGCCAAAGATGATGCCTGAAAGC
CAGTATCCATCAGAACAGAGATTTCAGCGACAGCTGTCTGAGCCCAGCCATCCCTTCCCTCCTCAGTCAG
GAGTTCCTGGAGATAGTCGCCCCAGCTACCACCGGCAGATGTCAGAGCCCATTGTCCCCGCAGCTCCGCC
ACCCCTTCAGGGATTCAAGCAGGAATACCATGACCCACTGTATGAACATGGGGTCCCTGGGATGCCTGGT
CCTCCAGCACATGGGTTCCAGTCACCCATGGGGATCAAGCAGGAGCCCCGAGATTACTGTGCTGACTCAG
AAGTGCCTAACTGCCAGTCATCCTACATGAGAGGCGGGTATTTCTCCAGCAGCCATGAAGGATTCCCGTA
TGAGAAGGACCCCAGGCTGTACTTTGATGATACTTGCGTGGTACCCGAGAGACTGGAAGGCAAAGTCAAG
CAGGAGCCCACCATGTATCGAGAGGGGCCTCCTTATCAGAGACGAGGCTCTCTGCAGCTGTGGCAGTTCC
TTGTCACCCTCCTGGATGACCCAGCCAATGCCCACTTCATCGCCTGGACTGGCCGAGGCATGGAATTTAA
GCTCATAGAACCGGAAGAGGTTGCTCGCCGTTGGGGTATCCAGAAGAATCGGCCAGCCATGAACTATGAC
AAGCTGAGCCGCTCTCTCCGCTATTACTATGAAAAGGGCATCATGCAGAAGGTGGCTGGGGAACGCTACG
TCTACAAATTTGTGTGTGACCCGGATGCACTCTTCTCTATGGCCTTCCCGGACAATCAGCGCCCGTTCCT
GAAGGCAGAATCCGAATGCCCCCTCAATGAGGAGGACACGCTGCCTCTGACTCACTTTGAAGACAACCCT
GCTTACCTCCTGGACATGGATCGCTGCAGCAGCCTCCCCTACACCGAAGGCTTCGCTTACTAA

Translation (510 aa):
MDGFCDQQVPFMVPGKSRSEDCRGRPLIDRKRKFVDTDLAHDSEELFQDLSQLQEAWLAEAQVPDDEQFV
PDFQSDNLVLHAPPPTKIKRELHSPSSELSSCSHEQALGAKYGEKCLYNYCAYDRKPPSGFKPLTPPATP
LSPTHQNSLFPPPQATLPTSGLTPGAGPVQGVGPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMPKMMPES
QYPSEQRFQRQLSEPSHPFPPQSGVPGDSRPSYHRQMSEPIVPAAPPPLQGFKQEYHDPLYEHGVPGMPG
PPAHGFQSPMGIKQEPRDYCADSEVPNCQSSYMRGGYFSSSHEGFPYEKDPRLYFDDTCVVPERLEGKVK
QEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYD
KLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECPLNEEDTLPLTHFEDNP
AYLLDMDRCSSLPYTEGFAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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