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Report for CCDS37002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37002.1 Public Mus musculus 14 Scel 23 108 98 CCDS HistoryNCBI Gene:64929Re-query CCDS DB by CCDS ID:37002.1Re-query CCDS DB by GeneID:64929See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095576.4 ENSMUSP00000093233.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095576.4Link to Ensembl Protein Viewer:ENSMUSP00000093233.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095576Re-query CCDS DB by Protein ID:ENSMUSP00000093233
Original member Current member NCBI NM_022886.2 NP_075024.2 Accepted alive Link to Nucleotide Sequence:NM_022886.2Link to Protein Sequence:NP_075024.2Re-query CCDS DB by Nucleotide ID:NM_022886Re-query CCDS DB by Protein ID:NP_075024Link to BLAST:NP_075024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075024.2 652 Q9EQG3 652 100% 0 0

Chromosomal Locations for CCDS 37002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 103529202 103529244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103529950 103530064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103533290 103533349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103536962 103537030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103540579 103540617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103541921 103541998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103543824 103543889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103560251 103560331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103562465 103562530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103564783 103564842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103570171 103570215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103571656 103571715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103572008 103572067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103574380 103574436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103576192 103576251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103577832 103577891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103581792 103581851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103583078 103583137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103585091 103585141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103586468 103586530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103591965 103592024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103592164 103592223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103592357 103592413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103599348 103599407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103602153 103602245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103603247 103603318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103605579 103605653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103608101 103608209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103610724 103610826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103612383 103612399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGTCAAATTTTTCCTCTAGAAAAAAGTCTCCAACTGGAAATGATCTGAAGAGCGCCCGGGGAGCTGAGC
TG
AGACAACAGGGTTTTCAGGACGTGAACAAAAGAAGGGCTTTCTTACAGGACAACAGCTGGATAAAGAA
G
CCCCCAGAGGAAGAACAAGACGGAAATTATGGCAGGGTGGTGCTCAACCGGCACAACTCCCATGATGCC
TTG
GACAGGAAATTAATAGAGAGAGATGAGCCAAAAGCCACAATTAGCCGGTACAGATCTGAGGACATGC
TG
GACAGAACACTGTCCTCATTTAGAACGCCACAATCAACCAAGACGCCAGCTGTCAGCTCCTTCAATGC
A
AACACTACCGCCACAGCTTCAACCCCCGCTACCACTCCTGTGAAGAAAAAGAGACAGTCCTGGTTCCCA
CCA
CCCCCTCCTGGTCACAATGCCTCTCCAAGCACAGCAGCCAGCAGAAGGGACCCAGCTCTGCACCCTC
CA
CTCCCCCCAAAGCCCTGTTCTCCCATTGCTTCTCCTAAACCATTGGGGCGGACTAATAGGCAGATACA
T
GCAGCTACAGCGGGGGCATGTGGAGAAACAGAACGACATGCTGAAAGAAATATAAGGACTGAGGATCTC
GAT
GACATCATCAGGGTGGCGGCTGCACTTCAGAAAACTGACAAGGGTGAAGAATTGGATAATCTCATCA
GA
ATGAACAAAAGCTTGAACAGAAACCAAGGTCTCGATGGCCTCTTCCGAGCAAACCTGAAGGCACAGCA
A
TTGGACAAAAGAGCCCAGAGTCTTGAAAGCCTGATCTATATGAACACACAGACGGACAGAGATGGCAAA
GG
A
AATCAAGCCTTCGGGAGCCTTAAGAAAATCAACCAAAGGGCTGACCCCGACAGAAGAAGCCAAGATC
TC
AGATCAGTTATCAGAACACATGCCACGGCTGAGAGAATCGGCAGAAGAAAACAAGACCTCGATGGACT
G
ATTAAAGTGAATCCTGACACAAATAAAAATATGAAGAGGGGCAAGAGCCTTGACAATCTTATCAAAGTC
ACC
CCGGAAGTAAACAGAAGCAACAAAGGGGGTCCAAGTCTTGACAATTTCACCAAAGGAGTTCCTGCAA
GG
AGCAGAGCTAACCAAAGGGACCAAGACCTGGACAGTCTTATCAAGGTGACCCCCTCAGCAAACAGAAG
C
AGCCAGCACAGTCTTGATGAACTTATTAATACAAGCCCCCAAACTATCAAAACTACTGCTAGACACCAA
GAT
CTCGATAAGTTCATCAAAGTAAATCCTGATGTTCTCACAAACAACCAAAGAAACCATGATGTAGACA
GC
ACCATCAGAGGGAATCCTACAGGGACCAGATGCGAGCAAAGCGAAGAGTTGGACAATCTTATCAAAGT
G
AAGCCTTCTGCTCTCAGAAACACAAATGGAGGCCAGGACCTAGAAAGCTTAACTGAAGTAAATTCTCAT
GTG
GCTGAGAAGAATGGGAGGATAGATGGCCAAGCCAATGGATTGACTAACAGTCTGTTCAAGGAGTCCA
CA
AGAGCCTCGGTCTATTCTTATGAAGCCAGAAACAGTCTCAGCTCCAATTCTGGAAACAAGAATGGTGG
A
CCCAAGGACACTGTTGTTTATACAAGGACATATGTGGAGAACAGTAAATCACCAAAGGATGGTTATCAG
GAA
AATATCTCAGGAAAATATATACAAACCGTTTATTCAACTTCAGATAGGTCTGTCATTGAAAGAGACA
TG
TGCACTTACTGCCGCAAGCCCTTGGGGGTGGAAACCAAGATGATTTTAGATGAATTACAGATCTGTTG
C
CATTCCACCTGCTTTAAGTGTGAAATATGCAAACGGCCTCTGGAAAATTTACAGGCAGGAGACAGTATT
TGG
ATCTATAGGCAGACGATACACTGTGAGCCCTGCTACTCTAAAGTGATGGCAAAATGGATTCAGTAA


Translation (652 aa):
MSNFSSRKKSPTGNDLKSARGAELRQQGFQDVNKRRAFLQDNSWIKKPPEEEQDGNYGRVVLNRHNSHDA
L
D
RKLIERDEPKATISRYRSEDMLDRTLSSFRTPQSTKTPAVSSFNANTTATASTPATTPVKKKRQSWFP
P
PPPGHNASPSTAASR
RDPALHPPLPPKPCSPIASPKPLGRTNRQIHAATAGACGETERHAERNIRTEDL
D
DIIRVAAALQKTDK
GEELDNLIRMNKSLNRNQGLDGLFRANLKAQQLDKRAQSLESLIYMNTQTDRDGK
G
NQAFGSLKKINQRADPDRRSQDLRSVIRTHATAERIGRRKQDLDGLIKVNPDTNKNMKRGKSLDNLIKV
T
PEVNRSNK
GGPSLDNFTKGVPARSRANQRDQDLDSLIKVTPSANRSSQHSLDELINTSPQTIKTTARHQ
D
LDKFIKVNPDVLTNNQ
RNHDVDSTIRGNPTGTRCEQSEELDNLIKVKPSALRNTNGGQDLESLTEVNSH
V
AEKNG
RIDGQANGLTNSLFKESTRASVYSYEARNSLSSNSGNKNGGPKDTVVYTRTYVENSKSPKDGYQ
E
NISGKYIQTVYSTSD
RSVIERDMCTYCRKPLGVETKMILDELQICCHSTCFKCEICKRPLENLQAGDSI
W
IYRQTIHCEPCYSKVM
AKWIQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser