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Report for CCDS36802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36802.1 Public Mus musculus 14 Fam3d 23 108 98 CCDS HistoryNCBI Gene:18300Re-query CCDS DB by CCDS ID:36802.1Re-query CCDS DB by GeneID:18300See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022269.6 ENSMUSP00000022269.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022269.6Link to Ensembl Protein Viewer:ENSMUSP00000022269.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022269Re-query CCDS DB by Protein ID:ENSMUSP00000022269
Original member Current member NCBI NM_146050.2 NP_666162.1 Accepted alive Link to Nucleotide Sequence:NM_146050.2Link to Protein Sequence:NP_666162.1Re-query CCDS DB by Nucleotide ID:NM_146050Re-query CCDS DB by Protein ID:NP_666162Link to BLAST:NP_666162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666162.1 223 P97805 223 100% 0 0

Chromosomal Locations for CCDS 36802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8349277 8349366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8352082 8352208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8353849 8353933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8355464 8355514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8357110 8357168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8358338 8358455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8361476 8361496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8364789 8364896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8367034 8367046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGAGAGTGGCAGGTCTGATCCGTGTTGTGGTCTTCATCTTTACCATAGTCACCATGTGGGTCTTCCTCC
GCAGCTACACAAGCTTCAGCAGGAAAACAATTCGTCTGCCACGCTGGCTGGGCATAACCCCCAAGGACAT
CCAGACCCCGAAGTCCAAGTGTGGGCTCAGCAAGATCTGCCCAAACAACTTTTTTGCATTTAAAATCAGC
AGTGGAGCTGCCAATGTGGTGGGCCCCTCCATGTGCTTTGAAGACGAAATTATCATGAGTCCAGTGCGAA
ACAACGTGGGCAGAGGCCTGAACGTTGCTCTGGTGAACGGATCAACTGGCCAGGTGATGAAAAAGGACAG
CTTTGACATGTACTCTGGAGACCCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAGCACCCTG
GTGCTGGTAGCCTCCTATGATGACCCAGGGACCAAAATGAACGACAAAATCAAGACGCTTTTCTCCAACC
TGGGAAGTTCCTACGCCAAGCAGCTGGGCTTCCGGGACAGCTGGGTCTTTGTAGGTGCTAAAGACCTCAA
GAGTAAAAGCCCATATGAGCAGTTCTTAAAGAACAACCCAGAAACAAACAAATATGACGGATGGCCGGAG
TTGCTAGAGCTCGAGGGCTGTGTGCCACGGAAAGTAATGTAG

Translation (223 aa):
MRVAGLIRVVVFIFTIVTMWVFLRSYTSFSRKTIRLPRWLGITPKDIQTPKSKCGLSKICPNNFFAFKIS
SGAANVVGPSMCFEDEIIMSPVRNNVGRGLNVALVNGSTGQVMKKDSFDMYSGDPQLLLNFLTEIPDSTL
VLVASYDDPGTKMNDKIKTLFSNLGSSYAKQLGFRDSWVFVGAKDLKSKSPYEQFLKNNPETNKYDGWPE
LLELEGCVPRKVM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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